View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3364_high_2 (Length: 488)
Name: NF3364_high_2
Description: NF3364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3364_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 18435518 - 18435069
Alignment:
| Q |
18 |
atcactactttgaccaccgttgatctctattctccacttagacagctgtctatagccacatccgaccatagctttcaaatatttaaatattttttataac |
117 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18435518 |
atcactactt-gaccaatgttgatctctattctccacttagacagccgtctatagccacatccgaccatagctttcaaatatttaaatattttttataat |
18435420 |
T |
|
| Q |
118 |
ataacttccgaatatnnnnnnn-----cttaaatttcttttgatattgtgtttcatcagaggtagtgtgattctcaggtcagagaaagcatgagtattgt |
212 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18435419 |
ataacttctgaataaaaaaaaaaaaaacttaaatttcttttgatattgtgtttcatccgaggtagtgtgattcacaggtcagagaaagcatgagtattgt |
18435320 |
T |
|
| Q |
213 |
caaaatagctttcttaatagttgttcgactatagttcacgcgacgtgcttgcaagtctatggtgtcgatttgttcctttctcgaataaacatcactccac |
312 |
Q |
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||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
18435319 |
caaaatagccttcttaatagttgctcgactatagttcatgcgacgtgcttgcaagtctatggtgtcgatttgttcctttctcgaataaagatcaatccac |
18435220 |
T |
|
| Q |
313 |
tgtcatttgttcacaacaaggcctctatttaatctttaaaacattctcataattacaaaaatccatttaaactaaaacacaaacaaaatagctgaaaggc |
412 |
Q |
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| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18435219 |
tatcatttgtccacaaca---cctctatttaatctttaaaacattctcataattacaaaaatccatttaaact-aaacacaaacaaaatagctgaaaggc |
18435124 |
T |
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| Q |
413 |
caaattggcctccactgacttgtgctaatgcacaaaatcttgaactttcaaaggaaac |
470 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
18435123 |
caaattggcctccactgacttgtgctaatgcacaa---catgaactttcaaaggaaac |
18435069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 144 - 473
Target Start/End: Complemental strand, 18421857 - 18421528
Alignment:
| Q |
144 |
aatttcttttgatattgtgtttcatcagaggtagtgtgattctcaggtcagagaaagcatgagtattgtcaaaatagctttcttaatagttgttcgacta |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
18421857 |
aatttcttttgatattgtgtttcatcagaggtagtgtgattcacaggtcagagaaagcatgagtattgtcaaaatagccttcttaatagttgctcgacta |
18421758 |
T |
|
| Q |
244 |
tagttcacgcgacgtgcttgcaagtctatggtgtcgatttgttcctttctcgaataaacatcactccactgtcatttgttcacaacaaggcctctattta |
343 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| |||||||| ||||||||| |||||||||| |
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| T |
18421757 |
tagttcacgcgacgtgcttgcaagtctatagtgtcgatttgttcctttctcgaataaagatcaatccactatcatttgtccacaacaagacctctattta |
18421658 |
T |
|
| Q |
344 |
atctttaaaacattctcataattacaaaaatccatttaaactaaaacacaaacaaaatagctgaaaggccaaattggcctccactgacttgtgctaatgc |
443 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18421657 |
atctttaaaacattctcataattacaaaactccatttaaactaaaacacaaacaaaatagctgaaaggccaaattggcctccactgacttgtgctaatgc |
18421558 |
T |
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| Q |
444 |
acaaaatcttgaactttcaaaggaaacaaa |
473 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
18421557 |
acaaaatcttgaactttcaaaggaaacaaa |
18421528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 303 - 473
Target Start/End: Complemental strand, 18403850 - 18403680
Alignment:
| Q |
303 |
atcactccactgtcatttgttcacaacaaggcctctatttaatctttaaaacattctcataattacaaaaatccatttaaactaaaacacaaacaaaata |
402 |
Q |
| |
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|||| |||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18403850 |
atcaatccactatcatttgtccacaacaagacctctatttaatctttaaaacattctcataattacaaaaatccatttaaactaaaacacaaacaaaata |
18403751 |
T |
|
| Q |
403 |
gctgaaaggccaaattggcctccactgacttgtgctaatgcacaaaatcttgaactttcaaaggaaacaaa |
473 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18403750 |
gctgaaaggccaaattggcctccactgacttgtgctaatgcacaaaatcttgaactttcaaaggaaacaaa |
18403680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 18422002 - 18421889
Alignment:
| Q |
18 |
atcactactttgaccaccgttgatctctattctccacttagacagctgtctatagccacatccgaccatagctttcaaatatttaaatattttttataac |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18422002 |
atcactactttgaccaccgttgatctatattctccacttagacagccatctatagccacatccgaccatagctttcaaatatttaaatattttttataat |
18421903 |
T |
|
| Q |
118 |
ataacttccgaata |
131 |
Q |
| |
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|||||||| ||||| |
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| T |
18421902 |
ataacttctgaata |
18421889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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