View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3364_high_6 (Length: 267)

Name: NF3364_high_6
Description: NF3364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3364_high_6
NF3364_high_6
[»] chr1 (10 HSPs)
chr1 (15-267)||(2287906-2288158)
chr1 (232-267)||(21365990-21366025)
chr1 (232-267)||(22947816-22947851)
chr1 (233-267)||(37598917-37598951)
chr1 (234-267)||(22515827-22515860)
chr1 (234-267)||(35702542-35702575)
chr1 (234-267)||(47989594-47989627)
chr1 (231-267)||(9828141-9828177)
chr1 (231-267)||(29144317-29144353)
chr1 (231-267)||(40917846-40917882)
[»] chr7 (5 HSPs)
chr7 (231-267)||(35862037-35862073)
chr7 (232-267)||(5409769-5409804)
chr7 (232-267)||(23128601-23128636)
chr7 (234-267)||(29763129-29763162)
chr7 (234-267)||(30813883-30813916)
[»] scaffold0019 (1 HSPs)
scaffold0019 (232-267)||(71822-71857)
[»] chr6 (5 HSPs)
chr6 (232-267)||(4878028-4878063)
chr6 (232-267)||(17327588-17327623)
chr6 (234-267)||(7723199-7723232)
chr6 (231-267)||(10649374-10649410)
chr6 (235-267)||(17841530-17841562)
[»] chr4 (9 HSPs)
chr4 (232-267)||(3064866-3064901)
chr4 (233-267)||(5775303-5775337)
chr4 (234-267)||(715545-715578)
chr4 (234-267)||(752871-752904)
chr4 (234-267)||(23292926-23292959)
chr4 (235-267)||(4383452-4383484)
chr4 (231-267)||(11596294-11596330)
chr4 (235-267)||(17425348-17425380)
chr4 (235-267)||(40965357-40965389)
[»] chr2 (3 HSPs)
chr2 (232-267)||(37419840-37419875)
chr2 (234-267)||(26769608-26769641)
chr2 (231-267)||(20539629-20539665)
[»] scaffold0475 (1 HSPs)
scaffold0475 (233-267)||(3394-3428)
[»] chr5 (10 HSPs)
chr5 (233-267)||(10298636-10298670)
chr5 (233-267)||(14873608-14873642)
chr5 (233-267)||(39695950-39695984)
chr5 (234-267)||(7677802-7677835)
chr5 (234-267)||(17123133-17123166)
chr5 (234-267)||(21576685-21576718)
chr5 (234-267)||(22423764-22423797)
chr5 (234-267)||(35017129-35017162)
chr5 (234-267)||(39698638-39698671)
chr5 (231-267)||(43564967-43565003)
[»] scaffold0793 (1 HSPs)
scaffold0793 (234-267)||(4821-4854)
[»] scaffold0027 (1 HSPs)
scaffold0027 (234-267)||(46743-46776)
[»] chr8 (4 HSPs)
chr8 (234-267)||(11833936-11833969)
chr8 (234-267)||(25566916-25566949)
chr8 (234-267)||(31514940-31514973)
chr8 (234-267)||(36450694-36450727)
[»] chr3 (7 HSPs)
chr3 (234-267)||(4990912-4990945)
chr3 (234-267)||(8842415-8842448)
chr3 (234-267)||(11252062-11252095)
chr3 (234-267)||(20503551-20503584)
chr3 (234-267)||(34185052-34185085)
chr3 (234-267)||(55401161-55401194)
chr3 (235-267)||(8789489-8789521)
[»] scaffold0004 (1 HSPs)
scaffold0004 (235-267)||(92908-92940)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 2287906 - 2288158
Alignment:
Q  15 cagagaggtactatgtatgatttttactttcatatatgagaaaaatgtgtgtatatcaattatcaaatgatgtaagcatttcctgaagaaaaagaatgat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2287906 cagagaggtactatgtatgatttttactttcatatatgagaaaaatgtgtgtatatcaattatcaaatgatgtaagcatttcctgaagaaaaagaatgat 2288005  T
Q  115 agcatgtactatgaaaatgtgtgtgtatctaatgatgatagcatatttgaacatatataaactagtatacagcagcgtatttctataaatccttcttaca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2288006 agcatgtactatgaaaatgtgtgtgtatctaatgatgatagcatatttgaacatatataaactagtatacagcagcgtatttctataaatccttcttaca 2288105  T
Q  215 ttttgcactaataatcgacctatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  2288106 ttttgcactaataatcgacctatgaagcactgacattcctcggattaggcgtg 2288158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 21365990 - 21366025
Alignment:
Q  232 acctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||||| ||||||||||||||||||||||    
T  21365990 acctatgaagcacggacactcctcggattaggcgtg 21366025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 22947851 - 22947816
Alignment:
Q  232 acctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||||| ||||||||||||||||||||||    
T  22947851 acctatgaagcacggacactcctcggattaggcgtg 22947816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 37598951 - 37598917
Alignment:
Q  233 cctatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||||| ||||||||||||||||||||||    
T  37598951 cctatgaagcacggacactcctcggattaggcgtg 37598917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 22515827 - 22515860
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  22515827 ctatgaagcacggacactcctcggattaggcgtg 22515860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 35702542 - 35702575
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  35702542 ctatgaagcacggacactcctcggattaggcgtg 35702575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 47989627 - 47989594
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  47989627 ctatgaagcacggacactcctcggattaggcgtg 47989594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 9828177 - 9828141
Alignment:
Q  231 gacctatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  9828177 gacctatgaagcacggacactcctcggattagacgtg 9828141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 29144317 - 29144353
Alignment:
Q  231 gacctatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  29144317 gacctatgaagcacggacactcttcggattaggcgtg 29144353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 40917882 - 40917846
Alignment:
Q  231 gacctatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||||||| |||| |||||||||||||||||    
T  40917882 gacctatgaagcacggacagtcctcggattaggcgtg 40917846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 35862073 - 35862037
Alignment:
Q  231 gacctatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||||||| ||||||||||||||||||||||    
T  35862073 gacctatgaagcacggacactcctcggattaggcgtg 35862037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 5409769 - 5409804
Alignment:
Q  232 acctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||||| ||||||||||||||||||||||    
T  5409769 acctatgaagcacggacactcctcggattaggcgtg 5409804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 23128601 - 23128636
Alignment:
Q  232 acctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||||| ||||||||||||||||||||||    
T  23128601 acctatgaagcacagacactcctcggattaggcgtg 23128636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 29763129 - 29763162
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  29763129 ctatgaagcacggacactcctcggattaggcgtg 29763162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 30813916 - 30813883
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  30813916 ctatgaagcacggacactcctcggattaggcgtg 30813883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 71857 - 71822
Alignment:
Q  232 acctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||||||||||||||||||||||| ||||    
T  71857 acctatgaagcaccgacactcctcggattagtcgtg 71822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 4878063 - 4878028
Alignment:
Q  232 acctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||||| ||||||||||||||||||||||    
T  4878063 acctatgaagcacggacactcctcggattaggcgtg 4878028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 17327588 - 17327623
Alignment:
Q  232 acctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||||| ||||||||||||||||||||||    
T  17327588 acctatgaagcacggacactcctcggattaggcgtg 17327623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 7723199 - 7723232
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  7723199 ctatgaagcacggacactcctcggattaggcgtg 7723232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 10649410 - 10649374
Alignment:
Q  231 gacctatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  10649410 gacctatgaagcacggacactccttggattaggcgtg 10649374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 17841530 - 17841562
Alignment:
Q  235 tatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||| ||||||||||||||||||||||    
T  17841530 tatgaagcacggacactcctcggattaggcgtg 17841562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 3064866 - 3064901
Alignment:
Q  232 acctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||||| ||||||||||||||||||||||    
T  3064866 acctatgaagcacggacactcctcggattaggcgtg 3064901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 267
Target Start/End: Original strand, 5775303 - 5775337
Alignment:
Q  233 cctatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||||| ||||||||||||||||||||||    
T  5775303 cctatgaagcacggacactcctcggattaggcgtg 5775337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 715545 - 715578
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  715545 ctatgaagcacggacactcctcggattaggcgtg 715578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 752871 - 752904
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  752871 ctatgaagcacggacactcctcggattaggcgtg 752904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 23292926 - 23292959
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtg 23292959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 4383484 - 4383452
Alignment:
Q  235 tatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||| ||||||||||||||||||||||    
T  4383484 tatgaagcacggacactcctcggattaggcgtg 4383452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 11596294 - 11596330
Alignment:
Q  231 gacctatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||||||| |||||||||| |||||||||||    
T  11596294 gacctatgaagcacggacactcctcagattaggcgtg 11596330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 17425348 - 17425380
Alignment:
Q  235 tatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||| ||||||||||||||||||||||    
T  17425348 tatgaagcacagacactcctcggattaggcgtg 17425380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 40965389 - 40965357
Alignment:
Q  235 tatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||||||||||||| |||||||||||    
T  40965389 tatgaagcaccgacactcctcagattaggcgtg 40965357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 37419875 - 37419840
Alignment:
Q  232 acctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||||| ||||||||||||||||||||||    
T  37419875 acctatgaagcacggacactcctcggattaggcgtg 37419840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 26769641 - 26769608
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtg 26769608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 20539629 - 20539665
Alignment:
Q  231 gacctatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||||||| |||||||||||||| |||||||    
T  20539629 gacctatgaagcacggacactcctcggatcaggcgtg 20539665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 3428 - 3394
Alignment:
Q  233 cctatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||||| ||||||||||||||||||||||    
T  3428 cctatgaagcacggacactcctcggattaggcgtg 3394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 10298670 - 10298636
Alignment:
Q  233 cctatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||||| ||||||||||||||||||||||    
T  10298670 cctatgaagcacggacactcctcggattaggcgtg 10298636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 14873642 - 14873608
Alignment:
Q  233 cctatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||||| ||||||||||||||||||||||    
T  14873642 cctatgaagcacggacactcctcggattaggcgtg 14873608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 267
Target Start/End: Original strand, 39695950 - 39695984
Alignment:
Q  233 cctatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||||||||||||||| ||||||||||||    
T  39695950 cctatgaagcaccgacactcctaggattaggcgtg 39695984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 7677835 - 7677802
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||||||| ||||||||||||||||||    
T  7677835 ctatgaagcaccgactctcctcggattaggcgtg 7677802  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 17123166 - 17123133
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  17123166 ctatgaagcacggacactcctcggattaggcgtg 17123133  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 21576685 - 21576718
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtg 21576718  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 22423764 - 22423797
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtg 22423797  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 35017162 - 35017129
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  35017162 ctatgaagcacggacactcctcggattaggcgtg 35017129  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 39698671 - 39698638
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  39698671 ctatgaagcacggacactcctcggattaggcgtg 39698638  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 267
Target Start/End: Complemental strand, 43565003 - 43564967
Alignment:
Q  231 gacctatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||||||| |||||| |||||||||||||||    
T  43565003 gacctatgaagcacggacacttctcggattaggcgtg 43564967  T

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Target: scaffold0793 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 4821 - 4854
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  4821 ctatgaagcacggacactcctcggattaggcgtg 4854  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 46776 - 46743
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  46776 ctatgaagcacggacactcctcggattaggcgtg 46743  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 11833969 - 11833936
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  11833969 ctatgaagcacagacactcctcggattaggcgtg 11833936  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 25566949 - 25566916
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  25566949 ctatgaagcacagacactcctcggattaggcgtg 25566916  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 31514973 - 31514940
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  31514973 ctatgaagcacggacactcctcggattaggcgtg 31514940  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 36450694 - 36450727
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtg 36450727  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 4990912 - 4990945
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  4990912 ctatgaagcacggacactcctcggattaggcgtg 4990945  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 8842448 - 8842415
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  8842448 ctatgaagcacggacactcctcggattaggcgtg 8842415  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 11252095 - 11252062
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  11252095 ctatgaagcacagacactcctcggattaggcgtg 11252062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 20503584 - 20503551
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtg 20503551  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Original strand, 34185052 - 34185085
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  34185052 ctatgaagcacggacactcctcggattaggcgtg 34185085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 267
Target Start/End: Complemental strand, 55401194 - 55401161
Alignment:
Q  234 ctatgaagcaccgacactcctcggattaggcgtg 267  Q
    ||||||||||| ||||||||||||||||||||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtg 55401161  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Original strand, 8789489 - 8789521
Alignment:
Q  235 tatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||| ||||||||||||||||||||||    
T  8789489 tatgaagcacggacactcctcggattaggcgtg 8789521  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 92940 - 92908
Alignment:
Q  235 tatgaagcaccgacactcctcggattaggcgtg 267  Q
    |||||||||| ||||||||||||||||||||||    
T  92940 tatgaagcacggacactcctcggattaggcgtg 92908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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