View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3364_high_7 (Length: 264)

Name: NF3364_high_7
Description: NF3364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3364_high_7
NF3364_high_7
[»] chr4 (13 HSPs)
chr4 (11-249)||(5211737-5211975)
chr4 (11-233)||(50066614-50066837)
chr4 (11-236)||(25514220-25514446)
chr4 (17-236)||(50518967-50519182)
chr4 (12-236)||(11477719-11477945)
chr4 (58-229)||(28257928-28258101)
chr4 (11-134)||(34496123-34496247)
chr4 (11-231)||(7579846-7580066)
chr4 (169-232)||(28069119-28069183)
chr4 (11-72)||(53947870-53947931)
chr4 (11-72)||(16056640-16056701)
chr4 (12-72)||(22393935-22393996)
chr4 (11-72)||(41524327-41524388)
[»] chr8 (14 HSPs)
chr8 (11-236)||(42714351-42714579)
chr8 (11-236)||(12765612-12765837)
chr8 (11-236)||(20035907-20036133)
chr8 (11-236)||(20025743-20025970)
chr8 (11-236)||(7835985-7836211)
chr8 (11-229)||(996637-996856)
chr8 (25-236)||(7806576-7806786)
chr8 (11-236)||(15968686-15968912)
chr8 (11-88)||(31577054-31577131)
chr8 (11-96)||(24267895-24267980)
chr8 (11-90)||(24097998-24098077)
chr8 (11-94)||(9417645-9417728)
chr8 (195-236)||(24268039-24268080)
chr8 (196-236)||(31576946-31576986)
[»] chr2 (5 HSPs)
chr2 (11-236)||(35875424-35875648)
chr2 (11-236)||(35882913-35883137)
chr2 (11-236)||(36722626-36722850)
chr2 (11-236)||(33402457-33402683)
chr2 (15-236)||(14271306-14271527)
[»] chr6 (6 HSPs)
chr6 (11-236)||(2846916-2847142)
chr6 (11-236)||(2849683-2849909)
chr6 (11-236)||(17514224-17514450)
chr6 (11-236)||(14097041-14097266)
chr6 (11-72)||(22228049-22228110)
chr6 (11-72)||(792808-792869)
[»] chr3 (5 HSPs)
chr3 (15-236)||(23484355-23484577)
chr3 (11-236)||(9294803-9295029)
chr3 (11-236)||(7787125-7787351)
chr3 (11-236)||(13978788-13979014)
chr3 (77-236)||(9307773-9307933)
[»] chr7 (8 HSPs)
chr7 (11-236)||(4315009-4315235)
chr7 (11-233)||(32816284-32816507)
chr7 (11-233)||(9735072-9735295)
chr7 (58-231)||(8981334-8981509)
chr7 (127-236)||(28343478-28343588)
chr7 (141-232)||(2890149-2890241)
chr7 (195-234)||(48714505-48714544)
chr7 (10-72)||(12103115-12103177)
[»] chr5 (7 HSPs)
chr5 (11-236)||(11221506-11221732)
chr5 (13-236)||(42734335-42734559)
chr5 (141-233)||(26648904-26648997)
chr5 (141-233)||(26920489-26920582)
chr5 (11-132)||(26648742-26648863)
chr5 (11-132)||(26920327-26920448)
chr5 (11-104)||(14914878-14914970)
[»] chr1 (8 HSPs)
chr1 (11-234)||(5383255-5383478)
chr1 (11-236)||(35756554-35756780)
chr1 (11-90)||(26908478-26908557)
chr1 (11-72)||(25825015-25825076)
chr1 (11-72)||(18063770-18063831)
chr1 (11-72)||(49331777-49331838)
chr1 (144-233)||(26908375-26908461)
chr1 (11-68)||(41206893-41206950)
[»] scaffold0091 (1 HSPs)
scaffold0091 (15-236)||(16437-16659)
[»] scaffold0482 (1 HSPs)
scaffold0482 (25-236)||(11901-12113)
[»] scaffold0186 (1 HSPs)
scaffold0186 (11-236)||(2934-3162)
[»] scaffold0842 (1 HSPs)
scaffold0842 (124-227)||(2979-3083)
[»] scaffold0206 (1 HSPs)
scaffold0206 (11-72)||(7837-7898)
[»] scaffold0811 (1 HSPs)
scaffold0811 (11-72)||(5075-5136)
[»] scaffold0153 (1 HSPs)
scaffold0153 (11-68)||(664-721)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 5211975 - 5211737
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  5211975 aatgataacaaacattacggaataaacgctaagttttatgaataatgatctactgatgtttgcacttaagtcttttcacataagtaaaccagaaaaaagt 5211876  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaatttatttgaatcaaaagagt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5211875 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaatttaattgaatcaaaagagt 5211776  T
Q  211 gtagattgaagattcaacaagaagattagctgtggtttt 249  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  5211775 gtagattgaagattcaacaagaagatgaactgtggtttt 5211737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 50066837 - 50066614
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||| | ||||||||||||||| ||||  || ||||| ||||    
T  50066837 aatgataacaaaccttatggaataaacactaagttttatgaatggtgatctactgatgtttgcacttaagtcttttcacaaaagttgacaagaaagaagt 50066738  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    |||||||||||||||||| |||||  ||||||||||||||||| ||||  ||||||| ||||||||| ||||| ||| ||| || |||||||||||  ||    
T  50066737 ctcttacaagtgcatatacatactcagtggaagaataccaaaacagtactatcacaagctcaaagaaaatataaaaagaatattgtttgaatcaaataag 50066638  T
Q  210 tgtagattgaagattcaacaagaa 233  Q
    ||| ||||||||||| ||||||||    
T  50066637 tgttgattgaagatttaacaagaa 50066614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 25514220 - 25514446
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| || ||||||| ||||||| | ||||||||||||||| ||||  || ||||| ||||    
T  25514220 aatgataacaaaccttatggaataaacactaagttttatgaatggtgatctactaatgtttgcacttaagtcttttcacaaaagttgacaagaaagaagt 25514319  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    ||||||||||||||||||||||||   |||||||||| ||| | | ||  ||||||| ||||||||| ||||| ||| ||| || |||||||||||  ||    
T  25514320 ctcttacaagtgcatatatatactcattggaagaatatcaatacattactatcacaagctcaaagaaaatataaaaagaatattgtttgaatcaaataag 25514419  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| ||||||||||| |||||||||||    
T  25514420 tgttgattgaagatttaacaagaagat 25514446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 236
Target Start/End: Complemental strand, 50519182 - 50518967
Alignment:
Q  17 aacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagtctctta 116  Q
    ||||||| ||||||||| ||||||||||||||| ||| || ||||||||||||||| | ||||||||||||||||||||  || ||||| ||||||        
T  50519182 aacaaaccttatggaattaacgctaagttttataaatggtgatctactgatgtttgcacttaagtcttttcacataagttgacaagaaagaagtct---- 50519087  T
Q  117 caagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagagtgtaga 215  Q
     |||||||||||||||||   ||| | |||||||||| ||||| ||||||| ||||||||||||||| ||| ||| || |||||||||||  ||||| ||    
T  50519086 -aagtgcatatatatactcattggtaaaataccaaaacagtagtatcacaagctcaaagaagatataaaaagaatattgtttgaatcaaataagtgttga 50518988  T
Q  216 ttgaagattcaacaagaagat 236  Q
    |||||||||||||||||||||    
T  50518987 ttgaagattcaacaagaagat 50518967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 11477719 - 11477945
Alignment:
Q  12 atgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagtc 111  Q
    |||||||||||| ||||| ||||||| ||||||||||||||| || ||||||||||||||| |  |||||||||||||| ||||  || ||||| |||||    
T  11477719 atgataacaaaccttatgaaataaacactaagttttatgaatggtgatctactgatgtttgcacataagtcttttcacaaaagttgacaagaaagaagtc 11477818  T
Q  112 tcttacaagtgcatatatatactttgtgg-aagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    |||||||||||||||||||||||   ||| ||  ||||||||| | ||| ||||||| ||||||||||||||| ||| ||| |  |||||||||||  ||    
T  11477819 tcttacaagtgcatatatatactcattggtaaacataccaaaacaatagtatcacaagctcaaagaagatataaaaagaatatcgtttgaatcaaataag 11477918  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    |||  |||||| |||||||||||||||    
T  11477919 tgttcattgaatattcaacaagaagat 11477945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 229
Target Start/End: Complemental strand, 28258101 - 28257928
Alignment:
Q  58 atctactgatgtttgtagttaagtcttttcac-ataagtaaaccagaaaaaagtctcttacaagtgcatatatatactttgtggaagaataccaaaatag 156  Q
    ||||||| ||||||| | |||||||||||||  | ||||| |  | ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  28258101 atctactaatgtttgcacttaagtcttttcaatagaagtagataaaaaagaagtctcttacaagtgtatatatatactttgtggaagaatatcaaaatag 28258002  T
Q  157 tagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagagtgtagattgaagattcaaca 229  Q
    ||||| ||||  || ||||||||||||||| |||| ||||||||||||||  ||||| ||||||||||||||||    
T  28258001 tagcaccacaggcttaaagaagatatagaagaaatattatttgaatcaaataagtgttgattgaagattcaaca 28257928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 34496247 - 34496123
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaa-gttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaag 109  Q
    ||||||||||||| |||||||||||||||||| ||||||||||  || || ||||||||||||   |||||||||||| || ||||| || ||||| |||    
T  34496247 aatgataacaaaccttatggaataaacgctaaagttttatgaaaggtgatatactgatgtttgcgcttaagtcttttcgcagaagtagacaagaaagaag 34496148  T
Q  110 tctcttacaagtgcatatatatact 134  Q
    ||||||||||||||||| |||||||    
T  34496147 tctcttacaagtgcataaatatact 34496123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 7579846 - 7580066
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaa-aaag 109  Q
    |||||||||| ||||||||||||||| ||||| ||| || ||| || ||||||| || |||| | |||||| |||||| |  |||| || ||||| ||||    
T  7579846 aatgataacagacattatggaataaaggctaaattt-attaatggtgatctactaatatttgcacttaagt-ttttcatagtagtagacaagaaagaaag 7579943  T
Q  110 tctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaatttattt-gaatcaaaaga 208  Q
    ||| |||||||||||| ||| ||||   || |||||| |||||  | || | ||| || ||||||||||||||||||| ||| | ||| |||||||||||    
T  7579944 tcttttacaagtgcatgtatttactcaatgaaagaatgccaaagcattaacttcaaaatctcaaagaagatatagaaataatatttttcgaatcaaaaga 7580043  T
Q  209 gtgtagattgaagattcaacaag 231  Q
    || | ||||||||||||||||||    
T  7580044 gtattgattgaagattcaacaag 7580066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 28069119 - 28069183
Alignment:
Q  169 ctcaaagaagatatagaaaaaat-ttatttgaatcaaaagagtgtagattgaagattcaacaaga 232  Q
    ||||||||||||||| ||| ||| || ||||||||||| |||||| |||||||||||||||||||    
T  28069119 ctcaaagaagatataaaaagaatattgtttgaatcaaatgagtgttgattgaagattcaacaaga 28069183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 53947931 - 53947870
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttg 72  Q
    ||||||||||||| || ||||||||| | ||||||||||||||  | |||||||||||||||    
T  53947931 aatgataacaaaccttgtggaataaatgataagttttatgaatgttgatctactgatgtttg 53947870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 16056640 - 16056701
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttg 72  Q
    ||||||||||||| || || |||||| | ||||||||||||||  | |||||||||||||||    
T  16056640 aatgataacaaaccttgtgtaataaatgataagttttatgaatgttgatctactgatgtttg 16056701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 22393935 - 22393996
Alignment:
Q  12 atgataacaaacattatggaataaac-gctaagttttatgaatagtaatctactgatgtttg 72  Q
    |||||||||||| || || ||||||| | ||||||||||||||  |||||||||||||||||    
T  22393935 atgataacaaaccttgtgaaataaactgataagttttatgaatgttaatctactgatgtttg 22393996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 41524327 - 41524388
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttg 72  Q
    ||||||||||||| || ||||||||| |  |||||||||||||  | |||||||||||||||    
T  41524327 aatgataacaaactttgtggaataaatgacaagttttatgaatgttgatctactgatgtttg 41524388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 42714579 - 42714351
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||| | ||||| || ||||  ||||    
T  42714579 aatgataacaaaccttatggaataaacgctaagttttatgaatggtgatctactgatgtttgcacttaagtcttttcagagaagtagacaagaattaagt 42714480  T
Q  111 ctcttacaagtgcatatatatacttt--gtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaag 207  Q
    ||||||||||||||||||||||| ||   || |||||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||||||||| |    
T  42714479 ctcttacaagtgcatatatatacgttcaatgaaagaataccaaaatagtagcgtcacaagctcaaagaagatatagaaaaaatattgtttgaatcaaatg 42714380  T
Q  208 agtgtagattgaagattcaacaagaagat 236  Q
    ||||| |||||||||||||||||||||||    
T  42714379 agtgttgattgaagattcaacaagaagat 42714351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 12765612 - 12765837
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||  ||||||||||||| ||||||||||||||| || ||||||||||||||| | ||||||||||||| | ||||| || ||||| ||||    
T  12765612 aatgataacaaattttatggaataaacactaagttttatgaatggtgatctactgatgtttgcacttaagtcttttcagagaagtagacaagaaataagt 12765711  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaatttatttgaatcaaaagagt 210  Q
    || ||||||||||||||||||| |   || ||||||||||||| ||||||||||||| |||||||||||||||||||||  || ||||||||||| ||||    
T  12765712 cttttacaagtgcatatatatattcaatgaaagaataccaaaacagtagcatcacaagctcaaagaagatatagaaaaatattgtttgaatcaaatgagt 12765811  T
Q  211 gtagattgaagattcaacaagaagat 236  Q
    || |||||||||||||||||||||||    
T  12765812 gttgattgaagattcaacaagaagat 12765837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 20035907 - 20036133
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| |||| |||||||| ||||||||||||||| || ||||||||||||||| | ||||||||||||| | ||||| || ||||  || |    
T  20035907 aatgataacaaactttatagaataaacactaagttttatgaatggtgatctactgatgtttgcacttaagtcttttcagagaagtagacaagaattaact 20036006  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    |||||||||||||||||||||| |   || ||||||||||||  ||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||    
T  20036007 ctcttacaagtgcatatatatattcaatgaaagaataccaaagcagtagcatcacaagctcaaagaagatatagaaaaaatattgtttgaatcaaatgag 20036106  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| |||||||||||||||||||||||    
T  20036107 tgttgattgaagattcaacaagaagat 20036133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 20025743 - 20025970
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| |||| |||||||| ||||||||||||||| || ||||||||||||||| | ||||||||||| | | ||||| || ||||  ||||    
T  20025743 aatgataacaaactttatagaataaacactaagttttatgaatggtgatctactgatgtttgcacttaagtctttttagagaagtagacaagaattaagt 20025842  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat--ttatttgaatcaaaaga 208  Q
    |||||||||||||||||||||| |   |  ||||||||||||| ||||||||||||| |||||||||||||||||||||||  || ||||||||||| ||    
T  20025843 ctcttacaagtgcatatatatattcaataaaagaataccaaaacagtagcatcacaagctcaaagaagatatagaaaaaattattgtttgaatcaaatga 20025942  T
Q  209 gtgtagattgaagattcaacaagaagat 236  Q
    |||| |||||||||||||||||||||||    
T  20025943 gtgttgattgaagattcaacaagaagat 20025970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 7835985 - 7836211
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||| | ||||||||||||| ||||||| ||||||| || ||||||| ||||||| | ||||||||||||| | ||||  || ||||| ||||    
T  7835985 aatgataacaacccttatggaataaacactaagttctatgaatggtgatctactcatgtttgcacttaagtcttttcaaagaagttgacaagaaagaagt 7836084  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    ||||||||||||||||||||||||   |||||||||||||||| |||| |||||||||||||||||||||||| ||| ||| ||  |||||| ||| |||    
T  7836085 ctcttacaagtgcatatatatactcattggaagaataccaaaacagtaccatcacaaactcaaagaagatataaaaagaatattgcttgaattaaatgag 7836184  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| |||||||||||||||||||||||    
T  7836185 tgttgattgaagattcaacaagaagat 7836211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 996637 - 996856
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||  || ||||| ||||    
T  996637 aatgataacaaaccttatggaataaacactaagttttatgaatagtgatctactgatgtttgcacttaagtcttttcacaaaagttgacaagaaagaagt 996736  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    ||||||||||||||||||| ||||   | |||||||||||||| ||||  ||||||| ||||||||| ||||| ||| ||| || |||||||||||  ||    
T  996737 ctcttacaagtgcatatatttactcattcgaagaataccaaaacagtactatcacaagctcaaagaaaatataaaaagaatattgtttgaatcaaataag 996836  T
Q  210 tgtagattgaagattcaaca 229  Q
    ||| ||||||||||| ||||    
T  996837 tgttgattgaagatttaaca 996856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 7806576 - 7806786
Alignment:
Q  25 ttatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagtctcttacaagtgca 124  Q
    ||||| ||||||| ||||||| ||||||| || ||||||| ||||||| | ||||||||||| | ||||||  || ||||| ||||||||||||||||||    
T  7806576 ttatgaaataaacactaagttctatgaatggtgatctactcatgtttgcacttaagtcttttaaaataagttgacaagaaagaagtctcttacaagtgca 7806675  T
Q  125 tatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaatttatttgaatcaaaagagtgtagattgaagatt 224  Q
    ||||||||||   |||||||||||||||| ||||  ||||||||||||||||||||||| ||||   || ||||||| ||| |||||| |||||||||||    
T  7806676 tatatatactcattggaagaataccaaaacagtactatcacaaactcaaagaagatata-aaaagtattgtttgaattaaatgagtgttgattgaagatt 7806774  T
Q  225 caacaagaagat 236  Q
    ||||||||||||    
T  7806775 caacaagaagat 7806786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 15968686 - 15968912
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| |||||||||||||  ||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||  ||   ||| | ||    
T  15968686 aatgataacaaaccttatggaataaacattaagttttatgaatagtgatctactgatgtttgcacttaagtcttttcacaaaagttgacattaaagaggt 15968785  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
     |||||||||||||||||||||||   ||| |||||| ||||| ||||| ||||||| ||||||  ||||| | ||| ||| || ||||||||||| | |    
T  15968786 atcttacaagtgcatatatatactcattggtagaatatcaaaacagtagtatcacaagctcaaaatagatagaaaaagaatattgtttgaatcaaatggg 15968885  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| |||||||||||||||||||||||    
T  15968886 tgttgattgaagattcaacaagaagat 15968912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 31577131 - 31577054
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttca 88  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||| | || ||||||||||    
T  31577131 aatgataacaaaccttatggaataaacactaagttttatgaatggtgatctactgatgtttgcacttgagtcttttca 31577054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 24267895 - 24267980
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagta 96  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| || |||||||||| |||| | || ||| |||| |||||||||    
T  24267895 aatgataacaaaccttatggaataaacactaagttttatgaatggtgatctactgatatttgcacttgagtattttaacataagta 24267980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 24098077 - 24097998
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcaca 90  Q
    ||||||||||| | ||||| ||||||| ||||||||||||||| || ||||||||||||||| | || ||||||||||||    
T  24098077 aatgataacaatctttatgaaataaacactaagttttatgaatggtgatctactgatgtttgcacttgagtcttttcaca 24097998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Original strand, 9417645 - 9417728
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataag 94  Q
    ||||||||||||| ||||| |||| || ||||||||||| ||| || |||||| |||||||| | |  ||||||||||||||||    
T  9417645 aatgataacaaaccttatgaaatagacactaagttttataaatggtgatctacagatgtttgcactcgagtcttttcacataag 9417728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 24268039 - 24268080
Alignment:
Q  195 tttgaatcaaaagagtgtagattgaagattcaacaagaagat 236  Q
    ||||||||||||||||||  | ||||||||||||||||||||    
T  24268039 tttgaatcaaaagagtgttaagtgaagattcaacaagaagat 24268080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 31576986 - 31576946
Alignment:
Q  196 ttgaatcaaaagagtgtagattgaagattcaacaagaagat 236  Q
    ||||||||||||||||| || |||||||||||||| |||||    
T  31576986 ttgaatcaaaagagtgttgagtgaagattcaacaaaaagat 31576946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 35875424 - 35875648
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||| | ||||| || ||||  ||||    
T  35875424 aatgataacaaacattatggaataaacgctaagttttatgaatggtgatctactgatgtttgcacttaagtcttttcagagaagtagacaagaattaagt 35875523  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    || |||||||||||||||||| |  ||   ||||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||    
T  35875524 ctattacaagtgcatatatattcaatga--aagaataccaaaacagtagcatcacaagctcaaagaagatatagaaaaaatattgtttgaatcaaatgag 35875621  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| |||||||||||||||||||||||    
T  35875622 tgttgattgaagattcaacaagaagat 35875648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 35882913 - 35883137
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||| | ||||| || ||||  ||||    
T  35882913 aatgataacaaacattatggaataaacgctaagttttatgaatggtgatctactgatgtttgcacttaagtcttttcagagaagtagacaagaattaagt 35883012  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    || |||||||||||||||||| |  ||   ||||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||    
T  35883013 ctattacaagtgcatatatattcaatga--aagaataccaaaacagtagcatcacaagctcaaagaagatatagaaaaaatattgtttgaatcaaatgag 35883110  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| |||||||||||||||||||||||    
T  35883111 tgttgattgaagattcaacaagaagat 35883137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 36722626 - 36722850
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||| | ||||| || ||||  ||||    
T  36722626 aatgataacaaacattatggaataaacgctaagttttatgaatggtgatctactgatgtttgcacttaagtcttttcagagaagtagacaagaattaagt 36722725  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    || |||||||||||||||||| |  ||   ||||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||    
T  36722726 ctattacaagtgcatatatattcaatga--aagaataccaaaacagtagcatcacaagctcaaagaagatatagaaaaaatattgtttgaatcaaatgag 36722823  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| |||||||||||||||||||||||    
T  36722824 tgttgattgaagattcaacaagaagat 36722850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 33402457 - 33402683
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||| | ||||||||||||| ||||||  || ||||| ||||    
T  33402457 aatgataacaaaccttatggaataaacactaagttttatgaatggtgatctactgatgtttgcacttaagtcttttcatataagttgacaagaaagaagt 33402556  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    ||||||||||||||||||||||||   ||| |||| | ||||| | ||| ||||||| || |||||||||||| ||| |||  | |||||||||||||||    
T  33402557 ctcttacaagtgcatatatatactcattggtagaaaatcaaaacaatagtatcacaagctgaaagaagatataaaaagaataatgtttgaatcaaaagag 33402656  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| |||||||||||||||||||||||    
T  33402657 tgttgattgaagattcaacaagaagat 33402683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 14271306 - 14271527
Alignment:
Q  15 ataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagtctct 114  Q
    ||||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||| | |||||| |||||||| ||||  |  ||||| ||||||||    
T  14271306 ataacaaactttatggaataaacactaagttttatgaatggtgatctactgatgtttgcacttaagt-ttttcacagaagttgataagaaagaagtctct 14271404  T
Q  115 tacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagagtgta 213  Q
    ||||||||||||||| ||||   ||| |||| | ||||| ||||| ||||||| || |||||||||||| ||| ||| || ||||||||||| ||||||     
T  14271405 tacaagtgcatatatgtactcattggtagaaaatcaaaacagtagtatcacaagctgaaagaagatataaaaataatattgtttgaatcaaatgagtgtt 14271504  T
Q  214 gattgaagattcaacaagaagat 236  Q
    ||||||||||| || ||||||||    
T  14271505 gattgaagattaaaaaagaagat 14271527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 2846916 - 2847142
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| || ||||| ||||||||| | || |||||||||| | ||||  || ||||| ||||    
T  2846916 aatgataacaaaccttatggaataaacactaagttttatgaattgtgatctattgatgtttgcatttgagtcttttcaaagaagttgacaagaaagaagt 2847015  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    |||| |||||||||||||||||||   || ||||||||||||||||||| ||||||| ||||||||||||||| ||| ||| || ||||||||||| |||    
T  2847016 ctctgacaagtgcatatatatactcattgaaagaataccaaaatagtagtatcacaagctcaaagaagatataaaaagaatattgtttgaatcaaatgag 2847115  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| |||||||||||||||||||||||    
T  2847116 tgttgattgaagattcaacaagaagat 2847142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 2849683 - 2849909
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||  ||||||||||||| | ||||||||||||| || ||||||||||||||| | || |||||||||||| ||||  || ||||| ||||    
T  2849683 aatgataacaaatcttatggaataaacacgaagttttatgaattgtgatctactgatgtttgcacttgagtcttttcacagaagttgacaagaaagaagt 2849782  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    | || |||||||||||||||||||   || ||||||||||||||||||| ||||||| ||||||||||||||| ||| ||| || ||||||||||| |||    
T  2849783 ccctgacaagtgcatatatatactcattgaaagaataccaaaatagtagtatcacaagctcaaagaagatataaaaagaatattgtttgaatcaaatgag 2849882  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| |||||||||||||||||||||||    
T  2849883 tgttgattgaagattcaacaagaagat 2849909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 17514450 - 17514224
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| |||| |||||||| ||||||||||| ||| || ||||||| || |||| | |||||||||||||   ||||| || | ||| ||||    
T  17514450 aatgataacaaaccttatagaataaacactaagttttataaatggtgatctacttatatttgcacttaagtcttttcaatgaagtagacaacaaataagt 17514351  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    |||||||||||||||||||||| |   || ||||||||||||| | ||||||||||||||||||||| ||||||||||||| || ||||||||||| ||     
T  17514350 ctcttacaagtgcatatatatattccatgaaagaataccaaaacaatagcatcacaaactcaaagaatatatagaaaaaatattgtttgaatcaaatgaa 17514251  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| |||||||||||||||||||||||    
T  17514250 tgttgattgaagattcaacaagaagat 17514224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 14097041 - 14097266
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||| | || |||||||||||| ||||  || ||||| ||||    
T  14097041 aatgataacaaaccttatggaataaacactaagttttatgaatggtgatctactgatgtttgca-ttgagtcttttcacagaagttgacaagaaagaagt 14097139  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    |||||||| |||||| ||||||||   || |||||||| ||||   ||| ||||||| ||||||||||||||| ||| ||| || ||||||||||| |||    
T  14097140 ctcttacaggtgcatgtatatactcattgaaagaatactaaaacgttagtatcacaagctcaaagaagatatacaaagaatattgtttgaatcaaacgag 14097239  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| || |||||||| |||||||||||    
T  14097240 tgttgactgaagatttaacaagaagat 14097266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 22228110 - 22228049
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttg 72  Q
    ||||||||||||| || ||||||||| | ||||||||||||||  |||||||||||||||||    
T  22228110 aatgataacaaaccttgtggaataaatgataagttttatgaatgctaatctactgatgtttg 22228049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 792869 - 792808
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttg 72  Q
    ||||||||||||| | |||||||||| | ||||||||||||||  | |||||||||||||||    
T  792869 aatgataacaaacctcatggaataaatgataagttttatgaatgttgatctactgatgtttg 792808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 23484355 - 23484577
Alignment:
Q  15 ataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagtctct 114  Q
    ||||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||| | ||||||||||||  | |||||||| ||||| |||||| |    
T  23484355 ataacaaactttatggaataaacactaagttttatgaatggtgatctactgatgtttgcacttaagtcttttccgagaagtaaacaagaaataagtcttt 23484454  T
Q  115 tacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagagtgta 213  Q
    |||||||||||| ||||| |   || ||||||||||||| | ||||||||||| ||||||||||||||||||||||| || ||||||||||| |||| |     
T  23484455 tacaagtgcatagatatattcaatgaaagaataccaaaacaatagcatcacaagctcaaagaagatatagaaaaaatattgtttgaatcaaatgagtatt 23484554  T
Q  214 gattgaagattcaacaagaagat 236  Q
    |||||||||||||||||||||||    
T  23484555 gattgaagattcaacaagaagat 23484577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 9295029 - 9294803
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| || |||||||||| ||||||||||||||| || ||||| ||||||||| | ||||||||||| ||| ||||  || ||||| ||||    
T  9295029 aatgataacaaaccttctggaataaacactaagttttatgaatggtgatctaatgatgtttgcacttaagtctttttacaaaagttgacaagaaagaagt 9294930  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    ||||||||||||||||||||||||   | |||||||||||||| | ||  ||||||  ||||||||||||||| ||| ||| || ||||||||||| |||    
T  9294929 ctcttacaagtgcatatatatactcatttgaagaataccaaaacaatactatcacaggctcaaagaagatataaaaagaatattgtttgaatcaaatgag 9294830  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| |||||||||||||||||||||||    
T  9294829 tgttgattgaagattcaacaagaagat 9294803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 7787351 - 7787125
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||| | || |||||||| ||| ||||  || ||||| ||||    
T  7787351 aatgataacaaactttatggaataaacactaagttttatgaatggtgatctactgatgtttgcaattgagtctttttacagaagttgacaagaaagaagt 7787252  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    | ||||||| ||||| ||||||||   || |||||||| |||| ||||| ||||||| ||||||||||||||| ||| ||| || || |||||||| |||    
T  7787251 cgcttacaattgcatgtatatactcattgaaagaatactaaaacagtagtatcacaagctcaaagaagatataaaaagaatattgttggaatcaaatgag 7787152  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| || | ||||||||||||||||||    
T  7787151 tgttgagtaaagattcaacaagaagat 7787125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 13979014 - 13978788
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| ||||||||||||| | ||||||||||||| || ||||||| ||||||| | ||||||||||||| | |||||  | ||||| ||||    
T  13979014 aatgataacaaaccttatggaataaacacaaagttttatgaatggtgatctacttatgtttgcacttaagtcttttcagagaagtaggcaagaaataagt 13978915  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    ||||||||| ||||| ||||||||   || ||||||||||||| | |||||| |||| |||||| |||||||| ||| ||| ||   |||||||||||||    
T  13978914 ctcttacaaatgcatgtatatactcgatgaaagaataccaaaacaatagcattacaagctcaaacaagatataaaaagaatattgcgtgaatcaaaagag 13978815  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    |||  |||| |||||||||||||||||    
T  13978814 tgtttattgtagattcaacaagaagat 13978788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 77 - 236
Target Start/End: Original strand, 9307773 - 9307933
Alignment:
Q  77 taagtcttttcacataagtaaaccagaaaaaagtctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaaga 176  Q
    |||||||||| ||| ||||  || ||||| ||||||||||||||||||||||||||||   |||||||||||||||| ||||  ||||||| ||||||||    
T  9307773 taagtctttttacaaaagttgacaagaaagaagtctcttacaagtgcatatatatactcattggaagaataccaaaacagtaatatcacaagctcaaaga 9307872  T
Q  177 agatatagaaaaaat-ttatttgaatcaaaagagtgtagattgaagattcaacaagaagat 236  Q
    | ||||| ||| ||| || |||||||||||  ||||| ||||||||||| |||||||||||    
T  9307873 aaatataaaaagaatattgtttgaatcaaataagtgttgattgaagatttaacaagaagat 9307933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 4315235 - 4315009
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    |||||||||||||  |||||||||||| ||||||||||||||| || ||| ||||||||||| | ||||||||||||||| ||||  || ||||| ||||    
T  4315235 aatgataacaaaccatatggaataaacactaagttttatgaatggtgatccactgatgtttgcacttaagtcttttcacagaagttgacaagaaagaagt 4315136  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    ||||||||||||||||||||||||   ||| |||||||||||| ||||| | ||||| ||||||||||||||| ||| ||| || ||| |||||||||||    
T  4315135 ctcttacaagtgcatatatatactcattggtagaataccaaaacagtagtaacacaagctcaaagaagatataaaaagaatattgtttaaatcaaaagag 4315036  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| ||||||||| |||||||||||||    
T  4315035 tgttgattgaagaatcaacaagaagat 4315009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 32816284 - 32816507
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||| | | |||| |||| | | ||||| || ||||| ||||    
T  32816284 aatgataacaaaccttatggaataaacactaagttttatgaatggtgatctactgatgtttgcactgaagtattttaagagaagtagacaagaaataagt 32816383  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    ||||||||||||||||||||||||   || ||||||||||||| |||||||||||||  |||||||||||||| ||| ||| || |||| |||||| ||     
T  32816384 ctcttacaagtgcatatatatactcaatgaaagaataccaaaacagtagcatcacaagatcaaagaagatataaaaagaatattgtttgtatcaaatgaa 32816483  T
Q  210 tgtagattgaagattcaacaagaa 233  Q
    ||| ||||| ||||||||||||||    
T  32816484 tgttgattgtagattcaacaagaa 32816507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 9735072 - 9735295
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| ||||||||||||  ||||||||||||||| || ||||||||||| ||| | |||||| |||||||| ||||  || ||||| ||||    
T  9735072 aatgataacaaaccttatggaataaagactaagttttatgaatggtgatctactgatggttgcacttaagtgttttcacagaagtggacaagaaagaagt 9735171  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    |||||||||||||||||| |||||  || |||||| ||||||| | | |||| |||| ||||||||||||||| ||| ||| || ||||||||||| |||    
T  9735172 ctcttacaagtgcatataaatactcagtagaagaacaccaaaacaatcgcatgacaagctcaaagaagatataaaaagaatattgtttgaatcaaatgag 9735271  T
Q  210 tgtagattgaagattcaacaagaa 233  Q
    |||  |||||||||||||||||||    
T  9735272 tgtttattgaagattcaacaagaa 9735295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 8981509 - 8981334
Alignment:
Q  58 atctactgatgtttgtagttaagtcttttcacataagtaaaccagaaa-aaagtctcttacaagtgcatatatatactttgtggaagaataccaaaatag 156  Q
    ||||||| || |||| | ||||||||||||||| | ||| || ||||| ||||||| |||||||||||| ||| ||||   || |||||| |||||  |     
T  8981509 atctactaatatttgcacttaagtcttttcacaaatgtagacaagaaagaaagtcttttacaagtgcatgtatttactcaatgaaagaatgccaaagcat 8981410  T
Q  157 tagcatcacaaactcaaagaagatatagaaaaaatttatttgaa-tcaaaagagtgtagattgaagattcaacaag 231  Q
    || | ||| || ||||||||||||||||||| ||| | ||| || |||||||||| | ||||||||||| ||||||    
T  8981409 taacttcaaaatctcaaagaagatatagaaataatatttttcaaatcaaaagagtattgattgaagatttaacaag 8981334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 28343478 - 28343588
Alignment:
Q  127 tatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagagtgtagattgaagattc 225  Q
    |||||||||  || |||||||| |||| ||||| | ||||| | ||||||| ||||| ||| ||| || ||| ||||||| |||||| ||| ||||||||    
T  28343478 tatatacttattgaaagaatactaaaacagtagtaacacaagcccaaagaatatataaaaagaatattgtttcaatcaaatgagtgttgatcgaagattc 28343577  T
Q  226 aacaagaagat 236  Q
    |||||||||||    
T  28343578 aacaagaagat 28343588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 2890149 - 2890241
Alignment:
Q  141 aagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagagtgtagattgaagattcaacaaga 232  Q
    ||||||||||||| |||||||||| || |||||||||||||| |||| ||| || ||||||| | |  | |||  ||||||||||||||||||    
T  2890149 aagaataccaaaacagtagcatcaaaagctcaaagaagatatggaaagaatattgtttgaattagataaatgttaattgaagattcaacaaga 2890241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 48714544 - 48714505
Alignment:
Q  195 tttgaatcaaaagagtgtagattgaagattcaacaagaag 234  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  48714544 tttgaatcaaatgagtgttgattgaagattcaacaagaag 48714505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 12103115 - 12103177
Alignment:
Q  10 caatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttg 72  Q
    |||||||||||||| || ||||||||| | ||||||||||||||  | |||||||||| ||||    
T  12103115 caatgataacaaaccttgtggaataaatgataagttttatgaatgttgatctactgatatttg 12103177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 11221506 - 11221732
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| ||||||||||||  |||||||||||||||||| ||||||||||| ||| | |||||| |||||||| ||||| || ||||| ||||    
T  11221506 aatgataacaaaccttatggaataaagactaagttttatgaatagtgatctactgatggttgcacttaagtgttttcacagaagtagacaagaaagaagt 11221605  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    |||||||||||||||||| |||||  || |||||| ||||||| | | ||||||||| ||||||||||||||  ||| ||| || ||||||||||| |||    
T  11221606 ctcttacaagtgcatataaatactcagtagaagaacaccaaaacaatcgcatcacaagctcaaagaagatatcaaaagaatattgtttgaatcaaatgag 11221705  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    |||  ||||||||||||||||||||||    
T  11221706 tgtttattgaagattcaacaagaagat 11221732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 42734559 - 42734335
Alignment:
Q  13 tgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagtct 112  Q
    ||||||||||| ||||||||||||  ||||||||||||||| || ||||||||||| ||| | |||||| |||||||| ||||| || ||||| ||||||    
T  42734559 tgataacaaaccttatggaataaagactaagttttatgaatggtgatctactgatggttgcacttaagtgttttcacagaagtagacaagaaagaagtct 42734460  T
Q  113 cttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagagtg 211  Q
    || ||||||||||||| |||||  || |||||| ||||||| | | ||||||||| ||||||||||||||  ||| ||| || ||||||||||| |||||    
T  42734459 ctaacaagtgcatataaatactcagtagaagaacaccaaaacaatcgcatcacaagctcaaagaagatatcaaaagaatattgtttgaatcaaatgagtg 42734360  T
Q  212 tagattgaagattcaacaagaagat 236  Q
    |  ||||||||||||||||||||||    
T  42734359 tttattgaagattcaacaagaagat 42734335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 26648904 - 26648997
Alignment:
Q  141 aagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagagtgtagattgaagattcaacaagaa 233  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| ||| ||| || ||||||||||| |||||| ||||||||||||||||||||    
T  26648904 aagaataccaaaacagtagcatcacaagctcaaagaagatatataaagaatattgtttgaatcaaatgagtgttgattgaagattcaacaagaa 26648997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 26920489 - 26920582
Alignment:
Q  141 aagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagagtgtagattgaagattcaacaagaa 233  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| ||| ||| || ||||||||||| |||||| ||||||||||||||||||||    
T  26920489 aagaataccaaaacagtagcatcacaagctcaaagaagatatataaagaatattgtttgaatcaaatgagtgttgattgaagattcaacaagaa 26920582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 26648742 - 26648863
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    |||||||| |||| ||||||||||||| ||||||||| ||||| || ||||||| ||||||  | ||||||||||||| | ||||| || | ||| ||||    
T  26648742 aatgataataaactttatggaataaacactaagttttctgaatggtgatctactaatgttttcacttaagtcttttcagaaaagtagacaaaaaataagt 26648841  T
Q  111 ctcttacaagtgcatatatata 132  Q
    ||||||| ||||||||||||||    
T  26648842 ctcttacgagtgcatatatata 26648863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 26920327 - 26920448
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    |||||||| |||| ||||||||||||| ||||||||| ||||| || ||||||| ||||||  | ||||||||||||| | ||||| || | ||| ||||    
T  26920327 aatgataataaactttatggaataaacactaagttttctgaatggtgatctactaatgttttcacttaagtcttttcagaaaagtagacaaaaaataagt 26920426  T
Q  111 ctcttacaagtgcatatatata 132  Q
    ||||||| ||||||||||||||    
T  26920427 ctcttacgagtgcatatatata 26920448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 14914878 - 14914970
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaa 104  Q
    ||||||||||||| ||||||||||||| ||||  |||| |||| || ||||||||| ||||| | || |||||||||||| |||||||| ||||    
T  14914878 aatgataacaaaccttatggaataaacactaa-ctttacgaattgtgatctactgacgtttgcacttgagtcttttcacagaagtaaacaagaa 14914970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 5383478 - 5383255
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    |||||||| |||| |||||||||||||  |||||||||||||| || |||||||||| |||||| || |||||||||||||||||   | ||||| ||||    
T  5383478 aatgataataaaccttatggaataaaca-taagttttatgaatggtgatctactgatttttgtacttgagtcttttcacataagttgtcaagaaagaagt 5383380  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    ||||||||||||||| ||||||||   |||||||||||||||  ||||| ||||||| ||||||||||||||| ||||||| || ||||||||||| |||    
T  5383379 ctcttacaagtgcatttatatactcattggaagaataccaaagcagtagtatcacaagctcaaagaagatataaaaaaaatattgtttgaatcaaatgag 5383280  T
Q  210 tgtagattgaagattcaacaagaag 234  Q
    ||| || ||||||||||||||||||    
T  5383279 tgttgaatgaagattcaacaagaag 5383255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 35756780 - 35756554
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagt 110  Q
    ||||||||||||| ||||||||||||| |||| |||||||||| || ||||||| ||||||| | ||||||||||||||| ||||  || ||||| ||||    
T  35756780 aatgataacaaaccttatggaataaacactaaattttatgaatggtgatctactaatgtttgcacttaagtcttttcacaaaagttgacaagaaagaagt 35756681  T
Q  111 ctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagag 209  Q
    ||||||||||||||||||||||||   || |||||||| |||| ||||  ||||||| ||| ||||||||||| ||| ||| || |||||||||||  ||    
T  35756680 ctcttacaagtgcatatatatactcattgaaagaatactaaaacagtactatcacaagctcgaagaagatataaaaagaatattgtttgaatcaaataag 35756581  T
Q  210 tgtagattgaagattcaacaagaagat 236  Q
    ||| |||| ||||||||||||||||||    
T  35756580 tgttgattaaagattcaacaagaagat 35756554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 26908557 - 26908478
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcaca 90  Q
    ||||||||||||| ||||||||||||| ||||||||||| ||| || ||||||||||||||| |  | ||||||||||||    
T  26908557 aatgataacaaaccttatggaataaacactaagttttattaatggtgatctactgatgtttgcacgtgagtcttttcaca 26908478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 25825076 - 25825015
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttg 72  Q
    ||||||||||||| || ||||||||| | ||||||||||||||| | |||||||||||||||    
T  25825076 aatgataacaaaccttgtggaataaatgataagttttatgaatattgatctactgatgtttg 25825015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 18063831 - 18063770
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttg 72  Q
    ||||||||||||| || ||||||||| | ||||||||||||||  | |||||||||||||||    
T  18063831 aatgataacaaaccttgtggaataaatgataagttttatgaatgttgatctactgatgtttg 18063770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 49331777 - 49331838
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttg 72  Q
    ||||||||||||| || ||||||||| | ||||||||||||||  | |||||||||||||||    
T  49331777 aatgataacaaaccttgtggaataaatgataagttttatgaatgttgatctactgatgtttg 49331838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 26908461 - 26908375
Alignment:
Q  144 aataccaaaatagtagcatcacaaactcaaa-gaagatatagaaaaaatttatttgaatcaaaagagtgtagattgaagattcaacaagaa 233  Q
    |||||||||  |||| ||||||||||||||| |||||||||| ||    || |||||||||||  ||||| ||||||||||||||| ||||    
T  26908461 aataccaaaccagtaacatcacaaactcaaaagaagatatagcaa----ttgtttgaatcaaataagtgttgattgaagattcaactagaa 26908375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 41206893 - 41206950
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatg 68  Q
    ||||||||||||| |  |||||||||   |||||||||||||| ||||||||||||||    
T  41206893 aatgataacaaacctcgtggaataaataataagttttatgaatggtaatctactgatg 41206950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 16659 - 16437
Alignment:
Q  15 ataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagtctct 114  Q
    ||||||||| ||||||||||||| |||| |||||||||| || ||||||||||||||| | ||| ||||||||||||||||  || ||||| ||||||||    
T  16659 ataacaaaccttatggaataaacactaaattttatgaatggtgatctactgatgtttgcacttaggtcttttcacataagttgacaagaaagaagtctct 16560  T
Q  115 tacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagagtgta 213  Q
    ||||| ||||||||||||||   ||| |||| | ||||| ||||| ||||||| || |||||||||||| ||| ||| || ||||||||||| ||||||     
T  16559 tacaactgcatatatatactcattggtagaaaatcaaaacagtagtatcacaagctgaaagaagatataaaaagaatattgtttgaatcaaatgagtgtt 16460  T
Q  214 gattgaagattcaacaagaagat 236  Q
    |||||||||||||||||||||||    
T  16459 gattgaagattcaacaagaagat 16437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0482 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 12113 - 11901
Alignment:
Q  25 ttatggaataaacgctaagttttatgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaagtctcttacaagtgca 124  Q
    ||||| ||||||| ||||||| ||||||| || ||||||| ||||||| | ||||||||||| | ||||||  || ||||| ||||||||||||||||||    
T  12113 ttatgaaataaacactaagttctatgaatggtgatctactcatgtttgcacttaagtcttttaaaataagttgacaagaaagaagtctcttacaagtgca 12014  T
Q  125 tatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagagtgtagattgaagat 223  Q
    ||||||||||   |||||||||||||||| ||||  ||||||||||||||||||||||| ||| ||| || ||||||| ||| |||||| ||||||||||    
T  12013 tatatatactcattggaagaataccaaaacagtactatcacaaactcaaagaagatataaaaagaatattgtttgaattaaatgagtgttgattgaagat 11914  T
Q  224 tcaacaagaagat 236  Q
    |||||||||||||    
T  11913 tcaacaagaagat 11901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 2934 - 3162
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagtttt--atgaatagtaatctactgatgtttgtagttaagtcttttcacataagtaaaccagaaaaaa 108  Q
    ||||||||||||| ||||| |||||||||||||||||  |||||  || ||||||||||||||| | ||||||||||||| | ||||| || ||||| |     
T  2934 aatgataacaaaccttatgaaataaacgctaagttttttatgaacggtgatctactgatgtttgcacttaagtcttttcagagaagtagacaagaaatat 3033  T
Q  109 gtctcttacaagtgcatatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaag 207  Q
    |||||||| |||||||||||||||||   |  ||||||||||||| ||||| ||||||| ||||||||| ||||||||| ||| || ||||||||||| |    
T  3034 gtctcttataagtgcatatatatactcaataaaagaataccaaaacagtagtatcacaagctcaaagaatatatagaaagaatattgtttgaatcaaatg 3133  T
Q  208 agtgtagattgaagattcaacaagaagat 236  Q
    ||||| ||||||||||| |||||||||||    
T  3134 agtgttgattgaagattaaacaagaagat 3162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0842 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0842
Description:

Target: scaffold0842; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 2979 - 3083
Alignment:
Q  124 atatatatactttgtggaagaataccaaaatagtagcatcacaaactcaaagaagatatagaaaaaat-ttatttgaatcaaaagagtgtagattgaaga 222  Q
    |||||||||||  || |||||||||||||||| |||||||  ||  |||||||||||||||||| ||| || |||||||||||||||||| |||| ||||    
T  2979 atatatatactcagtagaagaataccaaaataatagcatcgaaagttcaaagaagatatagaaagaatattgtttgaatcaaaagagtgttgattaaaga 3078  T
Q  223 ttcaa 227  Q
    |||||    
T  3079 ttcaa 3083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 7837 - 7898
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttg 72  Q
    ||||||||||||| |||| |||||||| ||||||||||||||| || |||||||||||||||    
T  7837 aatgataacaaactttatagaataaacactaagttttatgaatggtgatctactgatgtttg 7898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0811 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0811
Description:

Target: scaffold0811; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 5136 - 5075
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatgtttg 72  Q
    ||||||||||||| |  ||||||| | | |||||||||||||| || |||||||||||||||    
T  5136 aatgataacaaacctcgtggaatatatgataagttttatgaatggtgatctactgatgtttg 5075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 721 - 664
Alignment:
Q  11 aatgataacaaacattatggaataaacgctaagttttatgaatagtaatctactgatg 68  Q
    ||||||||||||| |  |||||||||   |||||||||||||| ||||||||||||||    
T  721 aatgataacaaacctcgtggaataaataataagttttatgaatggtaatctactgatg 664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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