View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3364_low_11 (Length: 205)
Name: NF3364_low_11
Description: NF3364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3364_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 26164053 - 26164239
Alignment:
| Q |
9 |
acatcatcaattgttgagacatcaaatgagaaagcaaccaaattttgtgtctcattggga-------ttgtatcataaccattccataaaagtcatttat |
101 |
Q |
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| T |
26164053 |
acatcatcaattgttgagacatcaaatgagaaagcaaccaaattttgtgtctcattgggagaattttttgtatcataaccattccataaaagtcatttgt |
26164152 |
T |
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| Q |
102 |
ccacttttttgtgtattagaactctgatagtaagcgattcatattcaacaaaggatggagatgaagataggaaatattagagtatgt |
188 |
Q |
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| T |
26164153 |
ctgcttttttgtgtattagaactctgatagtaagcgattcatattcaacaaaggatggagatgaagataggaaatattagagtatgt |
26164239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 30339201 - 30339113
Alignment:
| Q |
9 |
acatcatcaattgttgagacatcaaatgagaaagcaaccaaattttgtgtctcattggga-------ttgtatcataaccattccataa |
90 |
Q |
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| T |
30339201 |
acatcatcaattgttgagacatcaaatgagaaagcaaccaaattttgtgtatcattgggagaattttttgtatcataaccattccataa |
30339113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 7249120 - 7249208
Alignment:
| Q |
96 |
atttatccacttttttgtgtattagaactctgatagtaagcgattcatattcaacaaaggatggagatgaagataggaaatattagagt |
184 |
Q |
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| T |
7249120 |
atttgtccacttttttgtttattagaactctgatagtaagcaattcatattaaacaaatgatggagatgaaggtaggaaatattagagt |
7249208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 23915850 - 23915812
Alignment:
| Q |
9 |
acatcatcaattgttgagacatcaaatgagaaagcaacc |
47 |
Q |
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| T |
23915850 |
acatcatcaattgttgagacatcaaatgagaaagcaacc |
23915812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 18989672 - 18989710
Alignment:
| Q |
9 |
acatcatcaattgttgagacatcaaatgagaaagcaacc |
47 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |
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| T |
18989672 |
acatcaccaattgttgagacatcaaatgagaaagcaacc |
18989710 |
T |
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