View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3364_low_3 (Length: 455)
Name: NF3364_low_3
Description: NF3364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3364_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Complemental strand, 8141684 - 8141259
Alignment:
| Q |
19 |
tatacaaaatattatatttaaggattgatttcaaattagagattacaatatagttattgtggtttcaaagttcgcatttatctgcgatttgttatgatat |
118 |
Q |
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| T |
8141684 |
tatacaaaatattatatttaaggattgatttcaaattaaagattacaatatagttattgtggcttcaaaggtcgcatttatctgcgatttgttatgatat |
8141585 |
T |
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| Q |
119 |
agagaatcacaacgtaactgcaactgcaatttaaatcttcgatctatggtgtgaaaaaattggtgtatactactacatttgtgaagaatcggagaagcaa |
218 |
Q |
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| T |
8141584 |
agagaatcacaacgtaactgcaactgcaatttaaatcttcgatctatggtgtgaaaaaattggtgtata---ctacatttgtgaagaatc-gagaagcaa |
8141489 |
T |
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| Q |
219 |
caaaaaacaaacaacgaaatcacgaggnnnnnnnnntcataccgagggaccaatagatacaccattcttcaatgctgtgatcaagtgaaaaatgaaatgc |
318 |
Q |
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| T |
8141488 |
caaaaaacaaacaacgaaatcacgaggaaaaaaaaatcataccgagggaccaatggatacaccattcttcaatgctgtgatcaagtgaaaaatgaaatgc |
8141389 |
T |
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| Q |
319 |
ttagttcaatgtgaaaatgcaatagaaaacctttagtgacatattttagatttttcataaattcttacgagagacagttgcttgcatatcactgtagtag |
418 |
Q |
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| T |
8141388 |
ttagttcaatgtgaaaatgcaatagaaaacctttagtgacatattttagatttttcataaattcttacgagagacagttgcttgcatatcactgtagtag |
8141289 |
T |
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| Q |
419 |
tccatgttattattttgtggtcctttgctt |
448 |
Q |
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| T |
8141288 |
tccatgtttttattttgtggtcctttgctt |
8141259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 310
Target Start/End: Complemental strand, 8165257 - 8165203
Alignment:
| Q |
256 |
cataccgagggaccaatagatacaccattcttcaatgctgtgatcaagtgaaaaa |
310 |
Q |
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| T |
8165257 |
cataccgaggagccaatagttactccattcttcattgctgtgatcaagagaaaaa |
8165203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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