View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3364_low_4 (Length: 401)
Name: NF3364_low_4
Description: NF3364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3364_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 94 - 390
Target Start/End: Original strand, 21992814 - 21993108
Alignment:
| Q |
94 |
gtattgttatgtgtgttcctaaattggttttatttaagattgtgatcatataagtatttatctgagaatgattggaggtaataatttagactttaaatac |
193 |
Q |
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| T |
21992814 |
gtattgttatgtgtgttcctaaattggttttatttaagcttgtgatcatataagtatttatctgagaatgattggaggtaataatttagacttta----c |
21992909 |
T |
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| Q |
194 |
tatatattgacaacttaaaattttactaaatctcaccatgaagatgaccggttgtagggacaatgcattatgatatgctgaggccatctataa---tcat |
290 |
Q |
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| T |
21992910 |
tatatattgacaacgtaaaattt-actaaatctcaccatgaagatgaccggttgtagggacaatgcattattatatgttgaggctatctataataatcat |
21993008 |
T |
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| Q |
291 |
cacaaactcaattgcatatacatatagagcaagaaatgagtactgaattcacgttgaattttgtttatttcttttgcagttagaagagcaaactgtgatg |
390 |
Q |
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| T |
21993009 |
cacaaactcaattgcatatacatatagagcaagaaatgagtactgaattcacgttgagttttgtttatttcttttgcagttagaagagcaaactgtgatg |
21993108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 21992721 - 21992751
Alignment:
| Q |
1 |
aatataattcatttaggcacactcacacaac |
31 |
Q |
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| T |
21992721 |
aatataattcatttaggcacactcacacaac |
21992751 |
T |
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