View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3364_low_6 (Length: 308)
Name: NF3364_low_6
Description: NF3364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3364_low_6 |
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| [»] scaffold0896 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 4149855 - 4149566
Alignment:
| Q |
1 |
acaccgtggtcaaatgcatattttataacccacttgaggtggcgaggccagatgacaccttcgcggtgaagatggagagtgtgcagtgcggttttgttat |
100 |
Q |
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||||||||||||||||| |||||||||||||| ||||||| || ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
4149855 |
acaccgtggtcaaatgcgtattttataacccagttgaggtagccaggccagatgacaccatcgcggtgaagatcgagagtgtgcagtgcggttttgttat |
4149756 |
T |
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| Q |
101 |
cacgtagatacaaaaattgagacacgaatctgatgaaacccttccgagtctcgaagtggcaacaacttattgaaagaacaggaatatacttccagagatt |
200 |
Q |
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|||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4149755 |
cacgtagatacaaaaattgatacacgaatatggtgaaacccatccgagtctcgaagtggcaagaacttattgaaagaacaggaatatacttccagagatt |
4149656 |
T |
|
| Q |
201 |
cttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaattcggtaaatc |
290 |
Q |
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| T |
4149655 |
cttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaatcgacagtatgagaagtaacacacaattcggtaaatc |
4149566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 4165627 - 4165338
Alignment:
| Q |
1 |
acaccgtggtcaaatgcatattttataacccacttgaggtggcgaggccagatgacaccttcgcggtgaagatggagagtgtgcagtgcggttttgttat |
100 |
Q |
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||||||||||||||||| ||||||||||||||| |||||| || ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
4165627 |
acaccgtggtcaaatgcgtattttataacccacatgaggtagccaggccagatgacaccatcgcggtgaagatcgagagtgtgcagtgcggttttgttat |
4165528 |
T |
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| Q |
101 |
cacgtagatacaaaaattgagacacgaatctgatgaaacccttccgagtctcgaagtggcaacaacttattgaaagaacaggaatatacttccagagatt |
200 |
Q |
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| T |
4165527 |
cacgtagatacaaaaattgatacacgaatatggtgaaacccatccgagtctcgaagtggcaagaacttattgaaagaacaggaatatacttccagagatt |
4165428 |
T |
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| Q |
201 |
cttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaattcggtaaatc |
290 |
Q |
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| T |
4165427 |
cttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaatcgacagtatgagaagtaacacacaattcggtaaatc |
4165338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 290
Target Start/End: Original strand, 7115543 - 7115645
Alignment:
| Q |
188 |
acttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaattcggtaa |
287 |
Q |
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|||||||||||||||||||||| ||||| |||||| |||||||| || | |||||||||||||| || |||||| ||||||| ||||||| ||||| |
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| T |
7115543 |
acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa |
7115642 |
T |
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| Q |
288 |
atc |
290 |
Q |
| |
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||| |
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| T |
7115643 |
atc |
7115645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 290
Target Start/End: Original strand, 7120615 - 7120717
Alignment:
| Q |
188 |
acttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaattcggtaa |
287 |
Q |
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|||||||||||||||||||||| ||||| |||||| |||||||| || | |||||||||||||| || |||||| ||||||| ||||||| ||||| |
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| T |
7120615 |
acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa |
7120714 |
T |
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| Q |
288 |
atc |
290 |
Q |
| |
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||| |
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| T |
7120715 |
atc |
7120717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 290
Target Start/End: Original strand, 7124019 - 7124121
Alignment:
| Q |
188 |
acttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaattcggtaa |
287 |
Q |
| |
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|||||||||||||||||||||| ||||| |||||| |||||||| || | |||||||||||||| || |||||| ||||||| ||||||| ||||| |
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| T |
7124019 |
acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa |
7124118 |
T |
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| Q |
288 |
atc |
290 |
Q |
| |
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||| |
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| T |
7124119 |
atc |
7124121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 280
Target Start/End: Original strand, 8656649 - 8656740
Alignment:
| Q |
189 |
cttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaat |
280 |
Q |
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||||||||||||||||||||| || || |||||| |||||||| || | |||||||||||||| || |||||| ||||||| ||||||| |
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| T |
8656649 |
cttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaat |
8656740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 280
Target Start/End: Complemental strand, 32413704 - 32413613
Alignment:
| Q |
189 |
cttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaat |
280 |
Q |
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||||||||||||||||||||| | ||||| || || ||||||||||| | ||||||||||||| || |||||| ||||||| ||||||| |
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| T |
32413704 |
cttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaat |
32413613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 19658349 - 19658395
Alignment:
| Q |
190 |
ttccagagattcttccatctcgcggacagaacacaggtttgaacggc |
236 |
Q |
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|||||||||||| ||||||||| ||||| |||||| ||||||||||| |
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| T |
19658349 |
ttccagagattcctccatctcgtggacaaaacacaagtttgaacggc |
19658395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 19675188 - 19675234
Alignment:
| Q |
190 |
ttccagagattcttccatctcgcggacagaacacaggtttgaacggc |
236 |
Q |
| |
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|||||||||||| ||||||||| ||||| |||||| ||||||||||| |
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| T |
19675188 |
ttccagagattcctccatctcgtggacaaaacacaagtttgaacggc |
19675234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0896
Description:
Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 2321 - 2256
Alignment:
| Q |
188 |
acttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaa |
253 |
Q |
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|||||||||||||||||||||| || || |||||| |||||||| || | |||||||||||||| |
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| T |
2321 |
acttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaa |
2256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 1537 - 1473
Alignment:
| Q |
189 |
cttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaa |
253 |
Q |
| |
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||||||||||||||||||||| || || |||||| |||||||| || | |||||||||||||| |
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| T |
1537 |
cttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaa |
1473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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