View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3365_high_1 (Length: 947)

Name: NF3365_high_1
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3365_high_1
NF3365_high_1
[»] chr2 (10 HSPs)
chr2 (20-357)||(34325261-34325599)
chr2 (356-698)||(34326431-34326772)
chr2 (19-357)||(29352218-29352559)
chr2 (726-881)||(34326790-34326945)
chr2 (79-214)||(44918414-44918546)
chr2 (897-932)||(34327297-34327332)
chr2 (552-592)||(21428019-21428059)
chr2 (74-130)||(44912530-44912586)
chr2 (897-932)||(29351790-29351825)
chr2 (69-130)||(44937806-44937867)
[»] chr8 (5 HSPs)
chr8 (20-357)||(4027855-4028192)
chr8 (356-697)||(4028507-4028841)
chr8 (726-881)||(4028857-4029012)
chr8 (80-144)||(27183901-27183965)
chr8 (79-130)||(12724906-12724957)
[»] chr7 (6 HSPs)
chr7 (19-357)||(30249756-30250097)
chr7 (19-225)||(25628143-25628349)
chr7 (726-788)||(30250589-30250651)
chr7 (550-689)||(35052100-35052241)
chr7 (81-127)||(5442389-5442435)
chr7 (81-127)||(5451399-5451445)
[»] chr5 (5 HSPs)
chr5 (19-225)||(30651518-30651724)
chr5 (19-145)||(31777864-31777990)
chr5 (167-225)||(31778012-31778070)
chr5 (551-592)||(4615789-4615830)
chr5 (743-780)||(8614164-8614201)
[»] chr4 (4 HSPs)
chr4 (550-691)||(15559207-15559349)
chr4 (357-494)||(28110904-28111041)
chr4 (69-142)||(48741982-48742055)
chr4 (557-592)||(28110792-28110827)
[»] chr3 (2 HSPs)
chr3 (357-494)||(24837208-24837345)
chr3 (61-134)||(44550488-44550561)
[»] chr6 (2 HSPs)
chr6 (23-142)||(32744859-32744978)
chr6 (88-130)||(1146409-1146451)
[»] scaffold0129 (1 HSPs)
scaffold0129 (68-145)||(33545-33622)


Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-172; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 34325261 - 34325599
Alignment:
Q  20 ggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgt-gagtgaatcatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34325261 ggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgttgagtgaatcatg 34325360  T
Q  119 gactaaactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaa 218  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||    
T  34325361 gactaagctcttcactattggaccttttcccttctacattgagagacttattggagcaaggaggaatggtgatatatttttcgaaaaaaaagatgaaaaa 34325460  T
Q  219 atagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaaat 318  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34325461 atagtctgctatgatttaagtacacacatggttgaggaactcggtcttgaagaagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaaat 34325560  T
Q  319 ccagtgaatcattagttggttttcttgttctcaactaag 357  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34325561 ccagtgaatcattagttggttttcttgttctcaactaag 34325599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 356 - 698
Target Start/End: Original strand, 34326431 - 34326772
Alignment:
Q  356 agtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacag 455  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34326431 agtgtctggtgcggtaatggtggtttttggggtctgttacgtgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacag 34326530  T
Q  456 cctccctgctgtcctgcttctttacacctgtgctgctgtcctgttgctggtctggttcgcctgactggtttttcagcggctgggggnnnnnnncgttctg 555  Q
    |||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||  ||||||||||||||||||| ||||||||        ||||||    
T  34326531 cctcgctgctgtcctgcttctttgcacctgtgctgctgtgctgttgctggtctggtatgcctgactggtttttcagctgctgggggttttttg-gttctg 34326629  T
Q  556 ttttttccctccctgcgtggtgtggctaggtgcttttatgtttttggctgtgctgtttttgcgcactttcttgtatctcagttttggccgcgagtttttg 655  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34326630 ttttttccctccctgcatggtgtggctaggtgcttttatgttttttgctgtgctgtttttgcgcactttcttgtatctcagttttggccgcgagtttttg 34326729  T
Q  656 tgcgacttgcacaatctcaacgtgactaaaatttcgctatttc 698  Q
    |||| ||||||||||||| |||||| |||||||||||||||||    
T  34326730 tgcgtcttgcacaatctcgacgtgaataaaatttcgctatttc 34326772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 29352559 - 29352218
Alignment:
Q  19 tggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatg 118  Q
    ||||| |||||||||||||||||||||||||||||||||||  |   | |||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  29352559 tggtgatgttaaatgggtccatcgctttgatctcttggtatgtaggcaagactacctttgacatattaattttaggtgaacttggtgtgagtgaatcatg 29352460  T
Q  119 gactaaactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatt-tttcaaaaaagaagatgaaaa 217  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||  || |||||||| ||||||||||||||||||||| |||||||||| ||||| ||||    
T  29352459 gactaaactcttcactattggacctttgccctcctatattcaggaacctattggagtagggaggaatggtgatatattctttcaaaaaa-aagataaaaa 29352361  T
Q  218 aatagtctgctatgatttaagtacacgcatggttg---aggaactcggtcttgaagaagcaccatcaaatagaataatttacaagaaaaagtggtttgtc 314  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |    
T  29352360 aatagtctgctatgatttaagtacacgcatggttgaggaggaacttggtcttgaagaagcaccatcaaatagaataatttacaagaaagagtggtttgac 29352261  T
Q  315 aaatccagtgaatcattagttggttttcttgttctcaactaag 357  Q
    ||||||| | |   ||||||||||||||||||||| |||||||    
T  29352260 aaatccaataacagattagttggttttcttgttctaaactaag 29352218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 726 - 881
Target Start/End: Original strand, 34326790 - 34326945
Alignment:
Q  726 caaacaattactgaactcttacaaagaaacttatgaagaaattttgttggaatattatgctgtcaattaactgaattcttcaagatgtcatttaagtagc 825  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34326790 caaacaattactgaactcttacaaagaaacttatgaagaaattttgttggaatattatgctgtcaattaactgaattcttcaagatgtcatttaactagc 34326889  T
Q  826 tagtgttctttatcttagttttgacactcctaatgagcctgtcgaattactaaaca 881  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34326890 tagtgttctttatcttagttttgacactcctaatgagcctgtcgaattactaaaca 34326945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 44918546 - 44918414
Alignment:
Q  79 acatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggaccttttcccttctatattgagagacttattggagcagg 178  Q
    ||||||| ||||||||||||||||||| ||  ||||| ||||||||||||||   | |||||||  | ||   ||||||| || |  |||| ||||||||    
T  44918546 acatatcaattttaggtgaacttggtgggaaagaatcgtggactaaactctttgttgttggaccactgcc---ctatattaagtgttttatcggagcagg 44918450  T
Q  179 gaggaatggtgatatatttttcaaaaaagaagatga 214  Q
    ||  |||||||||||||||||| ||||| |||||||    
T  44918449 gaaaaatggtgatatatttttccaaaaaaaagatga 44918414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 897 - 932
Target Start/End: Original strand, 34327297 - 34327332
Alignment:
Q  897 attctcttttcatactaacaagttccatgaacattg 932  Q
    ||||||||||||||||||||||||||||||||||||    
T  34327297 attctcttttcatactaacaagttccatgaacattg 34327332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 552 - 592
Target Start/End: Complemental strand, 21428059 - 21428019
Alignment:
Q  552 tctgttttttccctccctgcgtggtgtggctaggtgctttt 592  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  21428059 tctgttttttccctccctgtgtggtgtggctgggtgctttt 21428019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 44912586 - 44912530
Alignment:
Q  74 ctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactctt 130  Q
    |||| ||||||||||||| ||||||||||||||||  ||||| || |||||||||||    
T  44912586 ctttcacatatcgattttgggtgaacttggtgtgaaggaatcgtgaactaaactctt 44912530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 897 - 932
Target Start/End: Complemental strand, 29351825 - 29351790
Alignment:
Q  897 attctcttttcatactaacaagttccatgaacattg 932  Q
    |||||||||||||||| |||||||||||||||||||    
T  29351825 attctcttttcatactcacaagttccatgaacattg 29351790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 44937867 - 44937806
Alignment:
Q  69 actacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactctt 130  Q
    ||||| ||| ||||||| ||||| |||||||| || ||||  ||||||||||||||||||||    
T  44937867 actacttttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctt 44937806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 294; Significance: 1e-164; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-164
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 4027855 - 4028192
Alignment:
Q  20 ggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatgg 119  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4027855 ggtggtgttaaatgggtccattgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatgg 4027954  T
Q  120 actaaactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaaa 219  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||| | ||||||    
T  4027955 actaaactcttcactattggaccttttcccttctctattgagagacctattggagcagggaggaatggtgatatattcttcaaaaaaaaaggtaaaaaaa 4028054  T
Q  220 tagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaaatc 319  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4028055 tagtctgctatgatttaagcacacacatggttgaggaactcggtcttgaagaagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaattc 4028154  T
Q  320 cagtgaatcattagttggttttcttgttctcaactaag 357  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4028155 cagtaaatcattagttggttttcttgttctcaactaag 4028192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 356 - 697
Target Start/End: Original strand, 4028507 - 4028841
Alignment:
Q  356 agtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacag 455  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |    
T  4028507 agtgtctggtgcggtaatggtggtttttggggtctgttatgcgggtgctgcggctttggtatgctgctgttctgcttttttggctaggagtatatgacgg 4028606  T
Q  456 cctccctgctgtcctgcttctttacacctgtgctgctgtcctgttgctggtctggttcgcctgactggtttttcagcggctgggggnnnnnnncgttctg 555  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||             ||||||    
T  4028607 cctcactgctgtcctgcttctttgcacctgtgctgctgtcctgttgctggtctggtatgcctgactggtttttcagctgct-------tttttagttctg 4028699  T
Q  556 ttttttccctccctgcgtggtgtggctaggtgcttttatgtttttggctgtgctgtttttgcgcactttcttgtatctcagttttggccgcgagtttttg 655  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4028700 ttttttccctccctgcgcggtgtggctaggtgcttttttgtttttggctgtgctgtttttgcgcactttcttgtatctcagttttggccgcgagtttttg 4028799  T
Q  656 tgcgacttgcacaatctcaacgtgactaaaatttcgctattt 697  Q
    |||| || || ||||||| |||||| ||||||||||||||||    
T  4028800 tgcgtctcgcgcaatctcgacgtgagtaaaatttcgctattt 4028841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 726 - 881
Target Start/End: Original strand, 4028857 - 4029012
Alignment:
Q  726 caaacaattactgaactcttacaaagaaacttatgaagaaattttgttggaatattatgctgtcaattaactgaattcttcaagatgtcatttaagtagc 825  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  4028857 caaacaattactgaactcttacaaagaaacttatgaagaaattttgttggaatattatgctgtcaattaactgaattcttcaagatgtcatttaactagt 4028956  T
Q  826 tagtgttctttatcttagttttgacactcctaatgagcctgtcgaattactaaaca 881  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4028957 ttttgttctttatcttagttttgacactcctaatgagcctgtcgaattactaaaca 4029012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 27183901 - 27183965
Alignment:
Q  80 catatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacctt 144  Q
    |||||||||||| |||||| ||||||| |  |||||||||| ||||||||||  |||||||||||    
T  27183901 catatcgattttgggtgaaattggtgtcaaagaatcatggattaaactcttcgatattggacctt 27183965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 12724906 - 12724957
Alignment:
Q  79 acatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactctt 130  Q
    |||||| |||||| ||||| |||| ||||| |||||||||||||||||||||    
T  12724906 acatatggattttgggtgagcttgctgtgaatgaatcatggactaaactctt 12724957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 2e-91; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 30249756 - 30250097
Alignment:
Q  19 tggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatg 118  Q
    ||||| ||||||||||||||||||||||||||||||| |||  |   | |||||||||||||||||  ||||||||||||||||| ||||||||||||||    
T  30249756 tggtgatgttaaatgggtccatcgctttgatctcttgttatgtaggcaagactacctttgacatattaattttaggtgaacttggagtgagtgaatcatg 30249855  T
Q  119 gactaaactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatttttc-aaaaaagaa--gatgaa 215  Q
    ||||||||||||||||||||||||||| |||| ||||||||||  || |||||||| ||||| ||||||||||||||| ||| |||||| ||  |||| |    
T  30249856 gactaaactcttcactattggacctttgccctcctatattgaggaacctattggagtagggaagaatggtgatatattcttcgaaaaaataaacgatgga 30249955  T
Q  216 aaaatagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcaccatcaaatagaataatttacaagaaaaagtggtttgtca 315  Q
    ||| |||||||||||||||||||||||| |||| |||||||| || ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||     
T  30249956 aaattagtctgctatgatttaagtacacacatgtttgaggaaatcagtcttgaagaaccaccatcaaatagaataacttacaagaaaaagtggtttatcg 30250055  T
Q  316 aatccagtgaatcattagttggttttcttgttctcaactaag 357  Q
    |||    | |  |||||||||||||||||||| |||||||||    
T  30250056 aattggatcacacattagttggttttcttgttttcaactaag 30250097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 25628143 - 25628349
Alignment:
Q  19 tggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatg 118  Q
    ||||| |||||||||| ||||| ||||||||||||||||||  | | ||||| |||||| |||||||  |||||||||||||||||||||||||||||||    
T  25628143 tggtgatgttaaatggttccattgctttgatctcttggtatggagacacgaccacctttcacatatcagttttaggtgaacttggtgtgagtgaatcatg 25628242  T
Q  119 gactaaactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaa 218  Q
    |||||||||||||| ||||||||||||  ||  |  | ||  |   | ||||||||||||||| |||||||||||||| ||||||  || ||||| ||||    
T  25628243 gactaaactcttcattattggacctttatccgacctttttatgtatcctattggagcagggagtaatggtgatatattcttcaaagcaggagatggaaaa 25628342  T
Q  219 atagtct 225  Q
     ||||||    
T  25628343 ctagtct 25628349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 726 - 788
Target Start/End: Original strand, 30250589 - 30250651
Alignment:
Q  726 caaacaattactgaactcttacaaagaaacttatgaagaaattttgttggaatattatgctgt 788  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30250589 caaacaattactaaactcttacaaagaaacttatgaagaaattttgttggaatattatgctgt 30250651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 550 - 689
Target Start/End: Complemental strand, 35052241 - 35052100
Alignment:
Q  550 gttctgttttttccctccctgcgtggtgtggctaggtgcttttatgtt--tttggctgtgctgtttttgcgcactttcttgtatctcagttttggccgcg 647  Q
    |||||| |||||||||||||||||||||||| |  ||| |||| ||||  |||||||||||   ||| |||||| || |||||| || ||||||||||||    
T  35052241 gttctggtttttccctccctgcgtggtgtggatgtgtgtttttctgttgttttggctgtgccagtttggcgcacgtttttgtatttctgttttggccgcg 35052142  T
Q  648 agtttttgtgcgacttgcacaatctcaacgtgactaaaattt 689  Q
    || ||||||||| || |||||||||| ||| || ||||||||    
T  35052141 agattttgtgcgtctcgcacaatctcgacgagaataaaattt 35052100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 5442389 - 5442435
Alignment:
Q  81 atatcgattttaggtgaacttggtgtgagtgaatcatggactaaact 127  Q
    ||||| |||||||||||| |||||||||  |||||||||||||||||    
T  5442389 atatctattttaggtgaaattggtgtgaaagaatcatggactaaact 5442435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 5451399 - 5451445
Alignment:
Q  81 atatcgattttaggtgaacttggtgtgagtgaatcatggactaaact 127  Q
    ||||| |||||||||||| |||||||||  |||||||||||||||||    
T  5451399 atatctattttaggtgaaattggtgtgaaagaatcatggactaaact 5451445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 5e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 30651518 - 30651724
Alignment:
Q  19 tggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatg 118  Q
    ||||| |||||||||| ||||| ||||||||||||||||||  | | ||||| |||||| |||||||  |||||||||||||||||||||||||||||||    
T  30651518 tggtgatgttaaatggttccattgctttgatctcttggtatgaagatacgaccacctttcacatatcagttttaggtgaacttggtgtgagtgaatcatg 30651617  T
Q  119 gactaaactcttcactattggaccttttcccttctatattgagagacttattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaa 218  Q
    |||||||||||| | ||||||||||||  ||  |  | ||  |   | ||||||||||||||| |||||||||||||| ||||||  || ||||| ||||    
T  30651618 gactaaactctttattattggacctttgtccgacctttttacgtatcctattggagcagggagtaatggtgatatattcttcaaagcaggagatggaaaa 30651717  T
Q  219 atagtct 225  Q
     ||||||    
T  30651718 ctagtct 30651724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 31777864 - 31777990
Alignment:
Q  19 tggtggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatg 118  Q
    ||||| |||||||||| ||||| ||||||||||||||||||  | | ||| | |||||| |||||||  |||||||||||||||||||||||||||||||    
T  31777864 tggtgatgttaaatggttccattgctttgatctcttggtatgaatacacggccacctttcacatatcagttttaggtgaacttggtgtgagtgaatcatg 31777963  T
Q  119 gactaaactcttcactattggaccttt 145  Q
    |||||||||||| | ||||||||||||    
T  31777964 gactaaactctttattattggaccttt 31777990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 31778012 - 31778070
Alignment:
Q  167 tattggagcagggaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagtct 225  Q
    ||||||||||||||| |||||||||||||| ||||||  || ||||| |||| ||||||    
T  31778012 tattggagcagggagtaatggtgatatattcttcaaagcaggagatggaaaactagtct 31778070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 592
Target Start/End: Complemental strand, 4615830 - 4615789
Alignment:
Q  551 ttctgttttttccctccctgcgtggtgtggctaggtgctttt 592  Q
    ||||||||||||||||||||||||| |||||| |||| ||||    
T  4615830 ttctgttttttccctccctgcgtggcgtggctgggtgttttt 4615789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 743 - 780
Target Start/End: Original strand, 8614164 - 8614201
Alignment:
Q  743 cttacaaagaaacttatgaagaaattttgttggaatat 780  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  8614164 cttacaaagaaactcatgaagaaatttggttggaatat 8614201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 7e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 550 - 691
Target Start/End: Original strand, 15559207 - 15559349
Alignment:
Q  550 gttctgttttttccctccctgcgtggtgtggctaggtgcttttatgtt-tttggctgtgctgtttttgcgcactttcttgtatctcagttttggccgcga 648  Q
    |||| |||||||||||||||||||||||||||| |||| |||  |||| |||||||||||||||||||||||| || ||||||||| ||||||||||| |    
T  15559207 gttcagttttttccctccctgcgtggtgtggctgggtgatttc-tgttgtttggctgtgctgtttttgcgcacattattgtatctctgttttggccgcaa 15559305  T
Q  649 gtttttgtgcgact-tgcacaatctcaacgtgactaaaatttcg 691  Q
    ||||||||| | || ||||||||||| |||| | ||||||||||    
T  15559306 gtttttgtgtgtctctgcacaatctcgacgttaataaaatttcg 15559349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 357 - 494
Target Start/End: Complemental strand, 28111041 - 28110904
Alignment:
Q  357 gtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacagc 456  Q
    |||| ||||||||||||||||| |||| ||| || ||| | ||| | || |||||||||||||||||| |||| | ||| ||||||||||||||||||||    
T  28111041 gtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagc 28110942  T
Q  457 ctccctgctgtcctgcttctttacacctgtgctgctgt 494  Q
    |||  ||||||||||||||||| |||||| ||||||||    
T  28110941 ctcattgctgtcctgcttctttgcacctgcgctgctgt 28110904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 48742055 - 48741982
Alignment:
Q  69 actacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggacc 142  Q
    |||||||||  |||||| |||||||||||||| |||||||  ||||| |||||||||||||||| | |||||||    
T  48742055 actaccttttgcatatcaattttaggtgaactcggtgtgaaggaatcttggactaaactcttcatttttggacc 48741982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 557 - 592
Target Start/End: Complemental strand, 28110827 - 28110792
Alignment:
Q  557 tttttccctccctgcgtggtgtggctaggtgctttt 592  Q
    |||||||||||||||||||||||||| |||||||||    
T  28110827 tttttccctccctgcgtggtgtggctgggtgctttt 28110792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 357 - 494
Target Start/End: Original strand, 24837208 - 24837345
Alignment:
Q  357 gtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacagc 456  Q
    |||| ||||||||||||||||| |||| ||| || ||| | ||| | || |||||||||||||||||| |||| | ||| ||||||||||||||||||||    
T  24837208 gtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagc 24837307  T
Q  457 ctccctgctgtcctgcttctttacacctgtgctgctgt 494  Q
    |||  ||||||||||||||||| |||||| ||||||||    
T  24837308 ctcattgctgtcctgcttctttgcacctgcgctgctgt 24837345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 44550561 - 44550488
Alignment:
Q  61 caaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcact 134  Q
    |||| |||||||| ||| | ||||| |||||||||||| | |||||||   ||| |||||||||||||||||||    
T  44550561 caaagacgactacttttcaaatatcaattttaggtgaattcggtgtgaagaaattatggactaaactcttcact 44550488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 32744978 - 32744859
Alignment:
Q  23 ggtgttaaatgggtccatcgctttgatctcttggtatccaaaaacgactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggact 122  Q
    |||||||||||||||||| || |||||||| |  |||  ||| |||||||| ||| ||||||| ||| | |||||  ||||| |||  |||||||||||     
T  32744978 ggtgttaaatgggtccattgcattgatctcatattatgaaaagacgactacttttcacatatcaattatgggtgagattggtatgaaagaatcatggacc 32744879  T
Q  123 aaactcttcactattggacc 142  Q
    || |||||||||||||||||    
T  32744878 aatctcttcactattggacc 32744859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 1146409 - 1146451
Alignment:
Q  88 ttttaggtgaacttggtgtgagtgaatcatggactaaactctt 130  Q
    ||||||||||  ||||||||||||||| |||||||||||||||    
T  1146409 ttttaggtgagtttggtgtgagtgaattatggactaaactctt 1146451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 145
Target Start/End: Complemental strand, 33622 - 33545
Alignment:
Q  68 gactacctttgacatatcgattttaggtgaacttggtgtgagtgaatcatggactaaactcttcactattggaccttt 145  Q
    |||||| ||| |||| || ||||| ||||||||||||||||  || || |||||||||||||| | |||||| |||||    
T  33622 gactacttttcacatttctattttgggtgaacttggtgtgaaggagtcttggactaaactctttattattgggccttt 33545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University