View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3365_high_102 (Length: 233)
Name: NF3365_high_102
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_102 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 35207241 - 35207447
Alignment:
| Q |
14 |
agacgtacactgttaacattttgtccaaaaacactatgcaacaaattgcatcggttttcctcaacaagacattaatcaactagccttaggtagaaaatct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35207241 |
agacgtacactgttaacattttgtccaaaaacactatgcaacaaattgcatcggttttcctaaacaagacattaatcaactagccttacgtagaaaatct |
35207340 |
T |
|
| Q |
114 |
ttcgatatatgtttgcacatcaagatgtacaaatatgtccaaatgtaaaagcaaccattcattg-aaaaaatgcacattttagcttaaataaaacatgtg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35207341 |
ttcgatatatgtttgcacatcaagatgtacaaatatgtccaaatgtaaaagcaaccattcattgaaaaaaatgcacattttagcttaaataaaacatgtg |
35207440 |
T |
|
| Q |
213 |
aattatt |
219 |
Q |
| |
|
||||||| |
|
|
| T |
35207441 |
aattatt |
35207447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University