View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_105 (Length: 227)
Name: NF3365_high_105
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_105 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0522 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 44 - 227
Target Start/End: Original strand, 24541557 - 24541740
Alignment:
| Q |
44 |
attgtagtttttctttatgtgcgataaacattgtttctttatttatgttttttagttaatgcccaaattcattgaactttatttgaatttaaggggaaaa |
143 |
Q |
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| T |
24541557 |
attgtggtttttctttatgtgtgataaacattgtttctttaattatgttttttagttaatgaccaaattcattgaactttatttgaatttaaggggaaaa |
24541656 |
T |
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| Q |
144 |
ttaacttgtttctctttattcatgcttgttagtgcatgacataaggagaaatttgggaagggttcaagggaatactgaagtgta |
227 |
Q |
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| T |
24541657 |
ataacttgtttctctttattcatgcttgttagtgcaagacataaggagaaatttgggaagggttcaagggaatactgaagtgta |
24541740 |
T |
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Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 68 - 222
Target Start/End: Complemental strand, 20963713 - 20963558
Alignment:
| Q |
68 |
taaacattgtttctttatttatgttttttagttaatgcccaaattcattgaactttatttgaatttaaggggaaaattaacttgtttctctttattcatg |
167 |
Q |
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| T |
20963713 |
taaacattgtttctttaattatgttttttagttgatgcccaaatttattgaaatttatttgaatttaaggggcaaattaaactgtttccttttattcatg |
20963614 |
T |
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| Q |
168 |
cttgttagtgcatgacataaggagaaatttgggaa-gggttcaagggaatactgaa |
222 |
Q |
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| T |
20963613 |
cttgttagtgcaagacataaagagaaatttgggaaggggatcaagggaatactgaa |
20963558 |
T |
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Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 3176366 - 3176505
Alignment:
| Q |
53 |
tttctttatgtgcgataaacattgtttctttatttatg-ttttttagttaatgcccaaattcattgaactttatttgaatttaaggggaaaattaacttg |
151 |
Q |
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| T |
3176366 |
tttctttatgtgtggtaaacattgtttctttatttatgtttttttagttaat--acaaattcaatgagctttatttgaatttaagggacaaattaaattg |
3176463 |
T |
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| Q |
152 |
tttctctttattcatgcttgttagtgcatgacataaggagaaat |
195 |
Q |
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| T |
3176464 |
--tctctttattcatgcttgttagtgcaagacatcaggagaaat |
3176505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 48531516 - 48531434
Alignment:
| Q |
74 |
ttgtttctttatttatgttttttagttaatgcccaaattcattgaactttatttgaatttaaggggaaaattaacttgtttct |
156 |
Q |
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| T |
48531516 |
ttgtttctttatttttgctttttagtcaatgtctaaattctttgagttttatttttgtttaaggggaaaataaaattgtttct |
48531434 |
T |
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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 14675393 - 14675523
Alignment:
| Q |
68 |
taaacattgtttctttatttatgtttt--ttagttaatgcccaaattcattgaactttatttgaatttaaggggaaaattaacttgtttctctttattca |
165 |
Q |
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| T |
14675393 |
taaacattgtttctttatttatattttttttagttaatgtccaatttcattaagctttaattgaatttaagaggaaaattaaattgtt--tctttattta |
14675490 |
T |
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| Q |
166 |
tgcttgttagtgcatgacataaggagaaatttg |
198 |
Q |
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| T |
14675491 |
ttcttgttagttcaaggtatatggagaaatttg |
14675523 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 11312481 - 11312441
Alignment:
| Q |
77 |
tttctttatttatgttttttagttaatgcccaaattcattg |
117 |
Q |
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| T |
11312481 |
tttccttatttatgctttttagttaatgcccaaattcattg |
11312441 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 95
Target Start/End: Original strand, 41525474 - 41525525
Alignment:
| Q |
44 |
attgtagtttttctttatgtgcgataaacattgtttctttatttatgttttt |
95 |
Q |
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| T |
41525474 |
attgcagtttttctttatgtgtagtaaacaatgtttctttatttatgttttt |
41525525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 1391 - 1436
Alignment:
| Q |
73 |
attgtttctttatttatgttttttagttaatgcccaaattcattga |
118 |
Q |
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| T |
1391 |
attgtttctttatttacgctttttagttactacccaaattcattga |
1436 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 16877657 - 16877697
Alignment:
| Q |
76 |
gtttctttatttatgttttttagttaatgcccaaattcatt |
116 |
Q |
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| T |
16877657 |
gtttccttatttatactttttagttaatgcccaaattcatt |
16877697 |
T |
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