View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_111 (Length: 217)
Name: NF3365_high_111
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_111 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 35247616 - 35247400
Alignment:
| Q |
1 |
aaagagaatgattatttcttagatgctaatgaagatgaaactgatattgaagctgttaactacgatagtgacagtagtaataataatgatgacgaggacg |
100 |
Q |
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| T |
35247616 |
aaagagaatgattatttcttagatgctaatgaagatgaaactgatattgaagctgttaactacgatagtgacagtagtaataataatgatgacgacgacg |
35247517 |
T |
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| Q |
101 |
acgatgatcgcattgctactcatcgacctgaatctttcacttctcaacaatggcctcaaagttacaagtatgtcaccagttatatttatgttacatattt |
200 |
Q |
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| T |
35247516 |
aagatgatcgcattgctactcatcgacctgaatctttcacttctcaacaatggcctcaaagttacaagtatgtcaccagttatattcatgttacatattt |
35247417 |
T |
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| Q |
201 |
tggtgacaattttgttt |
217 |
Q |
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| T |
35247416 |
tggcgacaattttgttt |
35247400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 35239305 - 35239222
Alignment:
| Q |
1 |
aaagagaatgattatttcttagatgctaatgaagatgaaactgatattgaagctgttaactacgatagtgacagtagtaataat |
84 |
Q |
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||||||||||| ||||| || ||||| || ||||||||||| || |||||||||||||||||||||||||||||||| |||||| |
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| T |
35239305 |
aaagagaatgaatattttttggatgcaaacgaagatgaaaccgacattgaagctgttaactacgatagtgacagtagcaataat |
35239222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 35239192 - 35239145
Alignment:
| Q |
126 |
acctgaatctttcacttctcaacaatggcctcaaagttacaagtatgt |
173 |
Q |
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| T |
35239192 |
acctgaatctttcacttctcaacaatggcctcaaacttacaagtatgt |
35239145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 15034207 - 15034245
Alignment:
| Q |
133 |
tctttcacttctcaacaatggcctcaaagttacaagtat |
171 |
Q |
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| T |
15034207 |
tctttcacttctcagcaatggcctcaaagctacaagtat |
15034245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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