View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_112 (Length: 213)
Name: NF3365_high_112
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_112 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 4858675 - 4858500
Alignment:
| Q |
22 |
aaattgacctttacaatgtattttctttttccttcnnnnnnnnn--gtattttctttgatatttgataacaatacatcttttatttattctgaattcaat |
119 |
Q |
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| T |
4858675 |
aaattgacctttacaatgtattttctttttccttcaaaaaaaatatgtattttctttgatatttgataacaatacatcttttatttattcagaattcaat |
4858576 |
T |
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| Q |
120 |
gtacaatttattgtatgtaaaagcttgttacgtgaacataacatagctcaatagtcacaatcacacttgtttgcaat |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4858575 |
gtacaatttattgtatgtaaaagcttgttacgtgaacataacata-ctcaatagtcacaatcacacttgtttgcaat |
4858500 |
T |
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