View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3365_high_113 (Length: 213)
Name: NF3365_high_113
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_113 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 4896794 - 4896918
Alignment:
| Q |
78 |
gagaattgctcctccaaacagtgaataatttgttgnnnnnnngatcatcttttgtatcagttttaaaaatatatatgctctttgatccacccaaagttct |
177 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| | ||||| ||||||| ||||||||||||||| |||| | |||||||||||||||||| |
|
|
| T |
4896794 |
gagaattgctcttccaaacagtgaataatttgttgattttttggtcatcctttgtatttgttttaaaaatatatttgctttatgatccacccaaagttct |
4896893 |
T |
|
| Q |
178 |
aaaaaccactaacataccatttctt |
202 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4896894 |
aaaaaccactaacataccatttctt |
4896918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 4902591 - 4902697
Alignment:
| Q |
1 |
tatataatgctgaaacttaccactactcttatactcactttgaacct---taacaacaacttgttcactaaattcccttcgagaattgctcctccaaaca |
97 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| |||||| | |
|
|
| T |
4902591 |
tatataatgttgaaacttaccactactcttgtactcactttgaacctcaacaacaacaacttgttcaataaattcccttcgaaaattgctcttccaaaga |
4902690 |
T |
|
| Q |
98 |
gtgaata |
104 |
Q |
| |
|
||||||| |
|
|
| T |
4902691 |
gtgaata |
4902697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 4896573 - 4896647
Alignment:
| Q |
1 |
tatataatgctgaaacttaccactactcttatactcactttgaaccttaacaacaacttgttcactaaattccctt |
76 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4896573 |
tatataatgctgaaacttaccactactcttgtactcactttgaaccttaacaacaa-ttgttcactaaattccctt |
4896647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 4908437 - 4908538
Alignment:
| Q |
1 |
tatataatgctgaaacttaccactactcttat-----actcactttgaaccttaacaacaacttgttcactaaattcccttcgagaattgctcctccaaa |
95 |
Q |
| |
|
|||||||||||||||||||||||| ||||| | ||||||||||||||| || ||||||||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
4908437 |
tatataatgctgaaacttaccacttctcttctcttgtactcactttgaacctcaataacaacttgttcactaaattccctttgagaattgttcttccaaa |
4908536 |
T |
|
| Q |
96 |
ca |
97 |
Q |
| |
|
|| |
|
|
| T |
4908537 |
ca |
4908538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 4929887 - 4929941
Alignment:
| Q |
137 |
gttttaaaaatatatatgctctttgatccacccaaagttctaaaaaccactaaca |
191 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
4929887 |
gttttaaaaatatataggctctttgatccacccaatattctaaaaatcactaaca |
4929941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4916378 - 4916434
Alignment:
| Q |
1 |
tatataatg-ctgaaacttaccactactcttatactcactttgaaccttaacaacaa |
56 |
Q |
| |
|
||||||||| |||||||||| |||||||||| ||||||||||||||| |||||||| |
|
|
| T |
4916378 |
tatataatggctgaaacttatcactactcttgcactcactttgaacctcaacaacaa |
4916434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University