View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_114 (Length: 213)
Name: NF3365_high_114
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_114 |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 5429325 - 5429144
Alignment:
| Q |
17 |
aatataatggacataaagtcatggtgacnnnnnnnnggactcaaagtcaatataaacatacaaattaaatcaagggaaaaaa--taaataattaagaaga |
114 |
Q |
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| T |
5429325 |
aatataatggacataaagtcatggtgacttttttttg-actcaaagtcaatataaacatacaaattaaatccagggaaaaaaaataaataaataagaaga |
5429227 |
T |
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| Q |
115 |
tgataagaaataagaatttcaaaacggagcttttccctctcacatccat------aaaccatagattttgaaaatgtacaagt |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5429226 |
tgataagaaataagaatttcaaaacggagcttttccctctcacatccataaacataaaccatagattttgaaaatgtacaagt |
5429144 |
T |
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