View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_22 (Length: 403)
Name: NF3365_high_22
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 35188862 - 35188490
Alignment:
| Q |
18 |
agaccatcctcctataaatcctatttttcattttcaacatcaagaaacaatagccattctggagaaggcttctcatttttcatatctctgaatgtaccat |
117 |
Q |
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| T |
35188862 |
agaccatcctcctataaatcctatttttcattttcaatatcaagaaacaatagccattctggagaaggcttctcatttttcatctctctgaatgtaccat |
35188763 |
T |
|
| Q |
118 |
cacaaacccacctttctattgccatatttggcctacacaaaacatttttt-gcggttgtgtttgatccacgttctgcagattcttcctcaatttcaatat |
216 |
Q |
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|||||||||||| || | || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
35188762 |
cacaaacccacccttttgttaccatatttggcctacacaaaacatttttttgcggttgtgtttgatccacgttccgcatattcttcctcaatttcaatat |
35188663 |
T |
|
| Q |
217 |
atctaaacaattcacatgcagctcctctaacatccatatctattgatgatcaatttgtggatctcaagagtactggagccacattctattcttagataga |
316 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35188662 |
atctaaacaattcacatgcagctcctctgacatccatatctattgatgatcaatttgtggatctcaagagtactggagccacattctattcttagataga |
35188563 |
T |
|
| Q |
317 |
atataaatcctcagttaaccttttttaagtatacctaagcaaatcgaattctaagccttctaccccttttctc |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35188562 |
atataaatcctcagttaaccttttttaagtatacctaagcaaatcgaattctaagccttctaccccttttctc |
35188490 |
T |
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