View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3365_high_24 (Length: 366)
Name: NF3365_high_24
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 32239906 - 32239768
Alignment:
| Q |
1 |
cagatatagaacacagctacaaaacctccatgcacagaaaactgacagaaatcagcgccaaatgcggagaagggcggaactcgctggaagtgaatcgcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32239906 |
cagatatagaacacagctacaaaacctccatgcacagaaaaccgacagaaatcagcgccaaatgcggagaagggcggaactcgctggaagtgaatcgcac |
32239807 |
T |
|
| Q |
101 |
agtaaaattggaagcaaatgctttgtaagatgtatagat |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32239806 |
agtaaaattggaagcaaatgctttgtaagatgtatagat |
32239768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 46470181 - 46470046
Alignment:
| Q |
4 |
atatagaacacagctacaaaacctccatgcacagaaaactgacagaaatcagcgccaaatgcggagaagggcggaactcgctggaagtgaatcgcacagt |
103 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |||||||||| ||||||||| | ||||| |||| ||||||| |
|
|
| T |
46470181 |
atatagaacacagctacaaagcctccaagcacagaaaactgacataaatcagcgccaattgcggagaagagcggaactcaccggaagggaattgcacagt |
46470082 |
T |
|
| Q |
104 |
aaaattggaagcaaatgctttgtaagatgtatagat |
139 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
46470081 |
aaaatcggaagcaaatcctttgtaagatgtatagat |
46470046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 33435811 - 33435757
Alignment:
| Q |
35 |
cagaaaactgacagaaatcagcgccaaatgcggagaagggcggaactcgctggaa |
89 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
33435811 |
cagaaaactgacagagttcagcgccaaacgcggagaagggcggatttcgctggaa |
33435757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University