View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_25 (Length: 361)
Name: NF3365_high_25
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 345
Target Start/End: Complemental strand, 8339370 - 8339037
Alignment:
| Q |
12 |
agagagtaagctcgagttcatgaaggtggggtccaatggcagcacgaacccaagtctctaccgaatattcacgaaacttatcgtccgagaaggaatgaac |
111 |
Q |
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| T |
8339370 |
agagagtaagctcgagttcatgaaggtggggtccaatggcagcacgaacccaagtctctacggaatattcacgaaacttatcgtccgtgaaggaatgaac |
8339271 |
T |
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| Q |
112 |
acagctgagactcatcttctgaatggcacggggattacgtaggagagccaggacaacgttaactagaagagcgaaactcttgaaacgctccgctggttgg |
211 |
Q |
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| T |
8339270 |
acagctgagactcatcttctgaatggcacggggattacgtaggagagccaggacaccgttaactagaagagcgaaactcttgaaacgctccgctggttgg |
8339171 |
T |
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| Q |
212 |
tcgacatactcatgggagtcatcggagaagtgaagaacggagagatgctgccagaggtggcgccaccggctagaaaggcgagcggtggaaactgaggttt |
311 |
Q |
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| T |
8339170 |
tcgacatactcatgggagtcatcggagaagtgaagaacggagagatgctgccagaggtggcgccaccggctagaaagtcgagcggtggaaactgaggttt |
8339071 |
T |
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| Q |
312 |
ttgtagggaggaatgagaggatatggttcaaaac |
345 |
Q |
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| T |
8339070 |
ttgtagggaggaatgaaaggatatggttcaaaac |
8339037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 17468270 - 17468207
Alignment:
| Q |
26 |
agttcatgaaggtggggtccaatggcagcacgaacccaagtctctaccgaatattcacgaaact |
89 |
Q |
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| T |
17468270 |
agttcttgaagatggggaccaatggcagcacgaacccaattatcaacagaatattcacgaaact |
17468207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 4453849 - 4453781
Alignment:
| Q |
127 |
cttctgaatggcacggggattacgtaggagagccaggacaacgttaactagaagagcgaaactcttgaa |
195 |
Q |
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| T |
4453849 |
cttccgaatggcgcggggattacggaggagagcaagcacaccattaactaaaagagcgaagctcctgaa |
4453781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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