View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_29 (Length: 352)
Name: NF3365_high_29
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 34794400 - 34794084
Alignment:
| Q |
19 |
aaagtaccatctattttgaaatttgatgtcttcaaaatcaaataatcttctttatattggataaataatggaagattttggctcctcctaaggtgttagc |
118 |
Q |
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| T |
34794400 |
aaagtaccatctattttgaaatttgatgtcttcaaaaccaaataatcttctttatattggataaataatggaagattttggctcctcctaaggtgttagc |
34794301 |
T |
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| Q |
119 |
atttagttggcaattgttgccgagttcgtaggctaccaacgaggcataacctgtttaaaaggaaggtaatccgtgctacctgctgtgtattgtgttaaat |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34794300 |
atttggttggcaattgttgccgagttcgtaggctaccaacgaggcataacctgtttaaaaggaaggtaatccgtgcaacctgctgtgtattgtgt----- |
34794206 |
T |
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| Q |
219 |
taaaggtctcaggaattggaaatttttatttgtttaagaggtgtattttatcaatttctatctagtatgaagtgtgtaattgacttggagtggtggttct |
318 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34794205 |
taaaggtctcaggaattggaaa--tttatttgtttaagaggtgtattttatcaatttctatctagtatgaagtgtgtaattgacttggagtggtggttct |
34794108 |
T |
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| Q |
319 |
tttgcttttattgtctccattctt |
342 |
Q |
| |
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|||||||||| ||||||||||||| |
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| T |
34794107 |
tttgcttttactgtctccattctt |
34794084 |
T |
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