View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_30 (Length: 352)
Name: NF3365_high_30
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 43636846 - 43637112
Alignment:
| Q |
1 |
tgtccattgaaggattatttgctaaacctatgtaatcatgttctaatggtgtagacatgaaaatggctaggtgaaaatatatcaaatattgaacacaagt |
100 |
Q |
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| T |
43636846 |
tgtccattgaaggattatttgctaaacctatgtaatcatgttctaatggtgtagacatgaaaatggctaggtgaaaatatatcaaatattgaacacaagt |
43636945 |
T |
|
| Q |
101 |
ttaaattattattacttatgatgatagttatagaaaacttagaatgaagagacgagagtatgaaggtgatgttatattattgatatgtatgtactatgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43636946 |
ttaaattattattacttatgatgatagttatagaaaacttagaatgaagagacgagagtatgaaggtgatgttatattattgatatgtatgtactatgta |
43637045 |
T |
|
| Q |
201 |
gcataggagaggagttggctgcttttgttaatgttcaaaacaaccttcttgggactttctgtaccaa |
267 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43637046 |
gcataggagaggagttggctggttttgttaatgttcaaaacaaccttcttgggactttctgtaccaa |
43637112 |
T |
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