View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_36 (Length: 347)
Name: NF3365_high_36
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 47318470 - 47318165
Alignment:
| Q |
19 |
cctttattatgcagcaagcctttaaatatttccatcgatgactacagggaattaacaatattttcaacatagtaatgaattgtcaatatatatctgaata |
118 |
Q |
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| T |
47318470 |
cctttattatgcagcaagcctttaaatatttccatcgatgactacagggaattaacaatattttcaacatagtaatgaattgtcaatatatatctgaata |
47318371 |
T |
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| Q |
119 |
accagaaaccatagatccagaagaagaaaaatgtagcttcctctaattctggctaattgattcacgtttcatgat---nnnnnnnnnccagcatatatta |
215 |
Q |
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| T |
47318370 |
accagaaaccatagatccagaagaagaaaaatgtagcttcctctaattctggctaattgattcacgtttcatgataaaaaaaaaaaaccagcatatatta |
47318271 |
T |
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| Q |
216 |
ggtacctacgctctaacattcttaaataccatatgattttcatttaagtgggtagaaaatttcttagggctgcaaacagtaattaggcttccacagaaag |
315 |
Q |
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| T |
47318270 |
ggtacctacgctctaacattcttaaataccatatgattttcatttaagtgggtagaaaatttcttagggctgcaaacagtaactaggcttccacagaatg |
47318171 |
T |
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| Q |
316 |
acaaat |
321 |
Q |
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|||||| |
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| T |
47318170 |
acaaat |
47318165 |
T |
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