View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_39 (Length: 334)
Name: NF3365_high_39
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 26441320 - 26441648
Alignment:
| Q |
1 |
cagaagaactgtttgaagagctgaatgtgctgaatgatatatataccatgcaacaagagcaacaagcacaaatgcttaactggaatgattataatgcgga |
100 |
Q |
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| T |
26441320 |
cagaagaactatttgaagagctgaatgtgctgaatgatatatataccatgcaacaagagcaacaagcacaaatgcttaactggaatgattataatgtgga |
26441419 |
T |
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| Q |
101 |
gcagctctcctatgatccattttcaaattataattcaattccatatgaacaaggtgagaacaagttaccatttttgt-aaaatatattcattttaggaat |
199 |
Q |
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| T |
26441420 |
gcagctctcctatgatccattttcaaattataattcaattccatatgaacaaggtgagaacaagttaccatttttgtaaaaatatattcattttaggaat |
26441519 |
T |
|
| Q |
200 |
tgtttgttattattgcaacaactactaagaaacaattattgtttccattatgagaagttcttgatctaaaattatggttgcataactcgttcatagatac |
299 |
Q |
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| T |
26441520 |
tgtttgttattattgcaacaactactaagaaacaattattgtttccattatgagaagttcttgatctaaacttatggttgcataactcgttcatagatac |
26441619 |
T |
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| Q |
300 |
acattaaatatagtaaatcaatactaggg |
328 |
Q |
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||||||||||||||||| ||||||||||| |
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| T |
26441620 |
acattaaatatagtaaagcaatactaggg |
26441648 |
T |
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