View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3365_high_42 (Length: 329)

Name: NF3365_high_42
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3365_high_42
NF3365_high_42
[»] chr3 (11 HSPs)
chr3 (6-311)||(27040970-27041275)
chr3 (15-311)||(27085416-27085712)
chr3 (15-232)||(27062263-27062480)
chr3 (63-232)||(27056268-27056438)
chr3 (15-232)||(27069330-27069547)
chr3 (229-301)||(27056465-27056537)
chr3 (229-301)||(27062507-27062579)
chr3 (15-105)||(27079619-27079709)
chr3 (6-149)||(27045309-27045452)
chr3 (229-301)||(27069574-27069646)
chr3 (22-80)||(27098062-27098120)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 6 - 311
Target Start/End: Original strand, 27040970 - 27041275
Alignment:
Q  6 agcagcagagagtgatgtaaatatcctaactcctccttccattgatggatcatcatcatcaagtttattaggagaaaagaaaaaacacgtatcgatggtg 105  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||  |||||| ||||||||||| ||||    
T  27040970 agcaacagggagtgatgtaaatatcctaactcctccttccattgatagatcatgatcatcaagtttattaggagatgagaaaatacacgtatcgagggtg 27041069  T
Q  106 gcaagcatcttgcatggtgcaggtacaaaattcactaattcatagacttcaaaatttaaattttcctgaaaacccaaatgtttcaactcacttagagacg 205  Q
     ||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27041070 ccaagcatcttgcatggtgcagttaaaaaattcactaattcatagccttcaaaatttaaattttcctgaaaacccaaatgtttcaactcacttagagacg 27041169  T
Q  206 ttactgcaccactagcttccaattccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27041170 ttactgcaccactagcttccaattccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggt 27041269  T
Q  306 ttcata 311  Q
    ||||||    
T  27041270 ttcata 27041275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 15 - 311
Target Start/End: Original strand, 27085416 - 27085712
Alignment:
Q  15 gagtgatgtaaatatcctaactcctccttccattgatggatcatcatcatcaagtttattaggagaaaagaaaaaacacgtatcgatggtggcaagcatc 114  Q
    ||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||  |||||| ||||||||||| |||| ||||||||    
T  27085416 gagtgatgtaaatatcctaactcctccttccattgacagatcatgatcatcaagtttattaggagatgagaaaatacacgtatcgagggtgccaagcatc 27085515  T
Q  115 ttgcatggtgcaggtacaaaattcactaattcatagacttcaaaatttaaattttcctgaaaacccaaatgtttcaactcacttagagacgttactgcac 214  Q
    ||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27085516 ttgcatggtgcagttaaaaaattcactaattcatagccttcaaaatttaaattttcctgaaaacccaaatgtttcaactcacttagagacgttactgcac 27085615  T
Q  215 cactagcttccaattccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcata 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27085616 cactagcttccaattccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcata 27085712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 27062263 - 27062480
Alignment:
Q  15 gagtgatgtaaatatcctaactcctccttccattgatggatcatcatcatcaagtttattaggagaaaagaaaaaacacgtatcgatggtggcaagcatc 114  Q
    |||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||  ||  ||||||  || | ||||| |||||||||||||    
T  27062263 gagtgaagtaaatatcctaactcctccatccattgatggatcatgatcatcaagtttattagctgatgagaaaatgcatgcatcgacggtggcaagcatc 27062362  T
Q  115 ttgcatggtgcaggtacaaaattcactaattcatagacttcaaaatttaaattttcctgaaaacccaaatgtttcaactcacttagagacgttactgcac 214  Q
    |||||||||||||||| ||||||||||||||||||  || |||||| |||||||||||||||||||||||||||| ||||  |||||  |||||||||||    
T  27062363 ttgcatggtgcaggtagaaaattcactaattcataacctccaaaatctaaattttcctgaaaacccaaatgtttccactctgttagaaccgttactgcac 27062462  T
Q  215 cactagcttccaattcca 232  Q
    ||||||||||||||||||    
T  27062463 cactagcttccaattcca 27062480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 63 - 232
Target Start/End: Original strand, 27056268 - 27056438
Alignment:
Q  63 atcaagtttattaggagaaaagaaaaaacacgtatcgatggtggcaagcatcttgcatggtgca--ggtacaaaattcactaattcatagacttcaaaat 160  Q
    ||||||||||||||||||  |||||| ||||||||||| ||||||||||||| |||||||| ||  |||| ||||||||||||||||||| |||||||||    
T  27056268 atcaagtttattaggagatgagaaaatacacgtatcgagggtggcaagcatcatgcatggtacacaggtaaaaaattcactaattcatagccttcaaaat 27056367  T
Q  161 ttaaattttcctgaaaacccaaatgtttcaactcacttagagacgttactgcaccactagcttccaattcca 232  Q
    ||||||||||||||||| ||||||||||||| |||| ||||  |||||||||||||||| ||||||||||||    
T  27056368 ttaaattttcctgaaaatccaaatgtttcaattcac-tagaaccgttactgcaccactatcttccaattcca 27056438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 27069330 - 27069547
Alignment:
Q  15 gagtgatgtaaatatcctaactcctccttccattgatggatcatcatcatcaagtttattaggagaaaagaaaaaacacgtatcgatggtggcaagcatc 114  Q
    ||||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||||||  ||||||  |||| ||| | ||| |||||||||    
T  27069330 gagtgatgtgaaaatcctaactcctccatccattgatggatcatgatcatcaagtttattaggagacgagaaaatgcacgcatcaacggtagcaagcatc 27069429  T
Q  115 ttgcatggtgcaggtacaaaattcactaattcatagacttcaaaatttaaattttcctgaaaacccaaatgtttcaactcacttagagacgttactgcac 214  Q
    ||||| ||||| ||||| |||||||| | ||||||| || |||||| || |||||| |||||||||||||| ||| ||||  | | |   ||||||||||    
T  27069430 ttgcacggtgctggtactaaattcacaacttcatagcctccaaaatctatattttcatgaaaacccaaatgcttccactctgtcaaaactgttactgcac 27069529  T
Q  215 cactagcttccaattcca 232  Q
    |||| |||||||||||||    
T  27069530 cacttgcttccaattcca 27069547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 27056465 - 27056537
Alignment:
Q  229 tccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaa 301  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27056465 tccaaagagtttattgagtttgtgacataatcagcaatgaaagcaatatttttagtctctttaatcagcttaa 27056537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 27062507 - 27062579
Alignment:
Q  229 tccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaa 301  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27062507 tccaaagagtttattgagtttcttacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaa 27062579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 27079619 - 27079709
Alignment:
Q  15 gagtgatgtaaatatcctaactcctccttccattgatggatcatcatcatcaagtttattaggagaaaagaaaaaacacgtatcgatggtg 105  Q
    ||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||  |||||| ||||||||||| ||||    
T  27079619 gagtgatgtaaatatcctaactcctccttccattgacagatcatgatcatcaagtttattaggagatgagaaaatacacgtatcgagggtg 27079709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 27045309 - 27045452
Alignment:
Q  6 agcagcagagagtgatgtaaatatcctaactcctccttccattgatggatcatcatcatcaagtttattaggagaaaagaaaaaacacgtatcgatggtg 105  Q
    |||| ||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||  ||||||   |||||  |||   || |  |      
T  27045309 agcaacagggagtgatgtaaaaatcttaactcctcctttcattgatggatcatcatcatcaagtttaccaggagatgcgaaaatgcacccttccaaagac 27045408  T
Q  106 gcaagcatcttgcatggtgcaggtacaaaattcactaattcata 149  Q
    |||| ||| ||||||||||| ||||||||||||||| |||||||    
T  27045409 gcaaacatgttgcatggtgctggtacaaaattcactgattcata 27045452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 27069574 - 27069646
Alignment:
Q  229 tccaaagagtttattgagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaa 301  Q
    |||| |||||| ||||| || |||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  27069574 tccacagagttgattgaattagtaacataatcagtggtgaaagaaatatttttagtctctttaatcagcttaa 27069646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 27098062 - 27098120
Alignment:
Q  22 gtaaatatcctaactcctccttccattgatggatcatcatcatcaagtttattaggaga 80  Q
    ||||| ||| |||| ||||||| |||||||||||||||||  |||| ||||||||||||    
T  27098062 gtaaaaatcttaacccctcctttcattgatggatcatcattgtcaaatttattaggaga 27098120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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