View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3365_high_44 (Length: 327)
Name: NF3365_high_44
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_44 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 1488365 - 1488051
Alignment:
| Q |
1 |
attagaacacggttgaacaaggtttagtagtgcataaactaaatcaacatcaaaagtaatgaaaatcacagataaacagacatgctttgaatatatttca |
100 |
Q |
| |
|
||||| ||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1488365 |
attaggacagggttgaataaggtttagtagtgcataaactaaatcaacattaaaagtaatgaaaatcacatataaacagacatgctttgaatatatttca |
1488266 |
T |
|
| Q |
101 |
ttaactattcctctgatgtatcctcgtgatagattacatactttcaagtttttggttatttcttcacctatcgttcttcgtacattattattcccggcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1488265 |
ttaactattcctctgatgtatcctcgtgatagattacatactttcaagtttttggttatttcttcacctatcgttcttcgtacattattattcccggcaa |
1488166 |
T |
|
| Q |
201 |
atcacgagagacctatcgtaccaattaaattctgattcttgactcagttaatctatatgataacattacaatccaacaatgttttgtgactgtaaaagga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1488165 |
atcacgagagacctatcgtaccaattaaattctgattcttgactcagttaatctatatgataacattacaatccaacaatgttttgtgactgtaaaaggc |
1488066 |
T |
|
| Q |
301 |
aacttagttaatctg |
315 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
1488065 |
aacttagtttatctg |
1488051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University