View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_45 (Length: 323)
Name: NF3365_high_45
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 128 - 235
Target Start/End: Complemental strand, 41504474 - 41504367
Alignment:
| Q |
128 |
atgccgttgtcgttggtacttcatgtatactcgagtatggcagttagttaggaataagaaaaaagacaataaagatagaagttgcttgctccataatctt |
227 |
Q |
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| T |
41504474 |
atgccgtggtcgttggtacttcatgtatactcgagtatggcagttagttaggaataagaaaaaagacaataaagatagaagttgcttgctccataatctt |
41504375 |
T |
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| Q |
228 |
aggaaccc |
235 |
Q |
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|||||||| |
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| T |
41504374 |
aggaaccc |
41504367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 41504529 - 41504473
Alignment:
| Q |
1 |
gtgtaggttagatgattaaatatgctaccagcccctaccacaaatactagtactcat |
57 |
Q |
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| T |
41504529 |
gtgtaggttagatgattaaatatgctaccagcccctaccacaaatactagtactcat |
41504473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 305
Target Start/End: Complemental strand, 41504329 - 41504297
Alignment:
| Q |
273 |
caacaacattacatggtgcctcaataatgaagt |
305 |
Q |
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| T |
41504329 |
caacaacattacatggtgcctcaataatgaagt |
41504297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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