View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3365_high_47 (Length: 322)
Name: NF3365_high_47
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_47 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 11150248 - 11149942
Alignment:
| Q |
1 |
gtcagtgatttctcagaccaaagtacatgactcaatatgacagaatgattactgagatttctcttttatgcattatgaaatatcgacacttctcagatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11150248 |
gtcagtgatttctcagaccaaagtacatgactcaatatgacagaatgattactgagatttctcttttatgcattatgaaatatcgacacttctcagatta |
11150149 |
T |
|
| Q |
101 |
ggcgtatttcggtatcagacatgtgttctgtccgacactgatacggcgctgacacat--atatttacattgaattatgccaccttttcaaaatattagcg |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11150148 |
ggcgtatttcggtatcagacatgtgttctgtccgacactgatacgacactgacacatatatatttacattgaattatgcgaccttttcaaaatattagcg |
11150049 |
T |
|
| Q |
199 |
ggttggtgtattagtgtacatatcgtatctggtgtctgtatccatatccatgcttctggagctagctagcttttagtatatgttggtcaaataaagagcc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11150048 |
ggttggtgtattagtgtacatatcgtatctgatgtctctatccatatccatgcttctggagctagctagcttttagtatatgttggtcaaataaagagcc |
11149949 |
T |
|
| Q |
299 |
ataaaat |
305 |
Q |
| |
|
||||||| |
|
|
| T |
11149948 |
ataaaat |
11149942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11173398 - 11173456
Alignment:
| Q |
1 |
gtcagtgatttctcagaccaaagtacatgactcaatatgacagaatgattactgagatt |
59 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
11173398 |
gtcagtgatttttcagaccaaagtacatgatgcaatatgatagaatgattactgagatt |
11173456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 29655927 - 29655975
Alignment:
| Q |
93 |
tcagattaggcgtatttcggtatcagacatgtgttctgtccgacactga |
141 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
29655927 |
tcagattaggcgtgtttcggtgtcagatatgtgttgtgtccgacactga |
29655975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 28524544 - 28524491
Alignment:
| Q |
85 |
gacacttctcagattaggcgtatttcggtatcagacatgtgttctgtccgacac |
138 |
Q |
| |
|
||||||||||||||||||||| |||| || ||||||| ||||| |||||||||| |
|
|
| T |
28524544 |
gacacttctcagattaggcgtgtttctgtgtcagacacgtgttgtgtccgacac |
28524491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 35056986 - 35056896
Alignment:
| Q |
85 |
gacacttctcagattaggcgtatttcggtatcagacatgtgttctgtccgacactgatacggcgctgacacatatatttacattgaattat |
175 |
Q |
| |
|
|||||| |||||||||||||| |||| || || |||| |||| |||||||||| || ||| | | |||||||||| ||||| |||||||| |
|
|
| T |
35056986 |
gacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattat |
35056896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University