View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_51 (Length: 309)
Name: NF3365_high_51
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_51 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 44374077 - 44374357
Alignment:
| Q |
19 |
atatccggcaaccgttaactaccgttgggccccagcagtacctaactac-gctgaattcatttctcaatttatgcctattccttattttcataactcacc |
117 |
Q |
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| T |
44374077 |
atatccggcaacaattaactaccgttgggccccagcagtagctaactaccgctgaattcatttctcaatttatgcctattccttattttcataactcacc |
44374176 |
T |
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| Q |
118 |
atgaataaggaacttgcagaatcgtgaattgcaaaatcgtgaattagggaataagaaatttggaattatataaagtttggggttgttgattactgaggat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44374177 |
atgaataaggaacttgcagaatcgtgaattgcaaaatcgtgaattagggaataagaaatttggaattatataaagtttggggttgttgattactgaggat |
44374276 |
T |
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| Q |
218 |
atatataaattaagaaattaggaatctgcactttcnnnnnnnngacacaagaaattaggaatctgcacttgtcttcttcat |
298 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44374277 |
atatataaattaagaatttaggaatctgcactttcttttttttgacacaagaaattaggaatctgcacttgtcttcttcat |
44374357 |
T |
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