View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3365_high_54 (Length: 300)
Name: NF3365_high_54
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_54 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 33346203 - 33346454
Alignment:
| Q |
18 |
tcaacgacggtccagtagccggattaatctccacctccatccgctcagctcttgatactccgctgaactacgcccgcacctacttagctgaccttctccc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33346203 |
tcaacgacggtccagtagccggattaatctccacctccatccgctcagctcttgatactccgctgaactacgcccgcacctacttagctgaccttctccc |
33346302 |
T |
|
| Q |
118 |
tgtctgcatcaccaaaattgtttaccttgactccgacttaatcctcgttgacgacattgcaatactcttcgctacacctctccgatcaaccaccatcctc |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33346303 |
tctctgcatcaccaaaattgtttaccttgactccgacttaatcctcgttgacgacattgcaatactcttcgctacacctctccgatcaaccaccatcctc |
33346402 |
T |
|
| Q |
218 |
gccgcaccggagtattgcaacgcaaatttcagtaactattttactccttcat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33346403 |
gccgcaccggagtattgcaacgcaaatttcagtaactattttactccttcat |
33346454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University