View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_64 (Length: 265)
Name: NF3365_high_64
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_64 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: scaffold0025 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 67349 - 67588
Alignment:
| Q |
9 |
agcacagacatatagcaaatattattgaagtgagtacaccaagaacttctgataaagctacaaactccatcttttctctacctctctttttcaattgctt |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
67349 |
agcaaagacatatagcaaatattattgaagtgagtacatcaagaacttctgataaagttacaaactccatcttttctctacctctctttttcaattgctt |
67448 |
T |
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| Q |
109 |
atgctatatataggtgttattgtggttaggaatgaaaaaatgtaattttgtgtgtatatgagtaattatgaagttattttggcactacgaatcataaagt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
67449 |
atgctatatataggtgttattgtggttaggaatgaaaaaatgtaattttgtgtgtacatgagtaattatgaagttattttggcactacgaatcataaagt |
67548 |
T |
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| Q |
209 |
ttagcttttgaccacatgataaaaacaatttgtgcaagtt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
67549 |
ttagcttttgaccacatgataaaaacaatttgtgcaagtt |
67588 |
T |
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