View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_65 (Length: 265)
Name: NF3365_high_65
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_65 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 648584 - 648843
Alignment:
| Q |
1 |
aaaaccaacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacacccagtatttaaacattgctagcttttgctctgaa |
100 |
Q |
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| T |
648584 |
aaaaccaacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacacccagtatttaaacattgctagcttttgttctgaa |
648683 |
T |
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| Q |
101 |
taaatgaagatttgtcttaaacacaccagacttttaaattttaaaatattaaatcacactcacactttcagtgactttcaatctaattgcaccatgcctt |
200 |
Q |
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| T |
648684 |
taaatgaagatttgtcttaaacacaccagacttttaaattttaaaatattaaatcacactcacactttcagtgactttcaatctaattgcaccatgcctt |
648783 |
T |
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| Q |
201 |
ttatgatttgtctgtttgcatattccactggcttctcttgattctggacttcatatctct |
260 |
Q |
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| T |
648784 |
ttatgatttgtctgtttgcatattccactggcttctcttgattctggacttcttatctct |
648843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 3 - 260
Target Start/End: Original strand, 685986 - 686240
Alignment:
| Q |
3 |
aaccaacaacaagtcctaaaatttcaattatgctaaaacattatattacttttctaaattacacccagtatttaaacattgctagcttttgctctgaata |
102 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||| || ||||||||||||||||| ||| |||| |
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| T |
685986 |
aaccaaaaacaagtcctaaaatttcagttatgctaaaacataatagaacttttataaattacacccagttttcaaacattgctagctttttttcttaata |
686085 |
T |
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| Q |
103 |
aatgaagatttgtcttaaacacaccagacttttaaattttaaaatattaaatcacactcacactttcagtgactttcaatctaattgcaccatgcctttt |
202 |
Q |
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| T |
686086 |
aatgaatatttgt-ttgaacagat-agacttttaaattttaaaatattaa-tcacactcacactttcagtgactttcaatctagttgtatcatacctttt |
686182 |
T |
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| Q |
203 |
atgatttgtctgtttgcatattccactggcttctcttgattctggacttcatatctct |
260 |
Q |
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||| ||| ||||||||||||||| |||| | |||||||||| ||||||| ||||||| |
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| T |
686183 |
atggtttatctgtttgcatattcaactgccgtctcttgattatggactttttatctct |
686240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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