View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3365_high_67 (Length: 262)
Name: NF3365_high_67
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_67 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 29728578 - 29728665
Alignment:
| Q |
127 |
catatgattctttcatttgctttgtgagattacaataaaatataaat----tcaacaaatttggagaatgatttgtgcaatatttaca |
210 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29728578 |
catatgattcttccatttgctttgtgagattacaataaaatataaatcaaatcaacaaatttggagaatgatttgtgcaatatttaca |
29728665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 29727279 - 29727339
Alignment:
| Q |
62 |
ttaagaggttcaggttgaatgattgttgcccaaaatagcataaagcttctattctaaagaa |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29727279 |
ttaagaggttcaggttgaatgattgttgcccaaaatagcataaagcttctattctaaagaa |
29727339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University