View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_70 (Length: 253)
Name: NF3365_high_70
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_70 |
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| [»] scaffold0089 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 20029425 - 20029668
Alignment:
| Q |
1 |
cgaagtcatgaattt-aatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaa |
99 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20029425 |
cgaagtcatgaatttcaatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaa |
20029524 |
T |
|
| Q |
100 |
accatggtgacattgttattttattaaaatttcaaagtttttcttttgtcaaaatcatcactataatattaaataagctgccttcgattatagtgatgac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20029525 |
accatggtgacattgttattttattaaaatttcaaagtttttcttttgtcaaaatcatcactataatattaaataagctgccttcgattatagtgatgac |
20029624 |
T |
|
| Q |
200 |
tttgaaagatattcctaactatctatctatctagtgcgtctgtg |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20029625 |
tttgaaagatattcctaactatctatctatctagtgcgtgtgtg |
20029668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0089 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0089
Description:
Target: scaffold0089; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 34610 - 34838
Alignment:
| Q |
1 |
cgaagtcatgaattt-aatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaa |
99 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34610 |
cgaagtcatgaatttcaatttgacttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaa |
34709 |
T |
|
| Q |
100 |
accatggtgacattgttattttattaaaatttcaaagtttttcttttgtcaaaatcatcactataatattaaataagctgccttcgattatagtgatgac |
199 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34710 |
accatggtgacaatgttattttattaaaatttcaaagtttttcttttgtcaaaatcatcactataatattaaataagttgccttcgattatagtgatgac |
34809 |
T |
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| Q |
200 |
tttgaaagatattcctaactatctatcta |
228 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
34810 |
tttgaaagatattcctaactatctatcta |
34838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 20513627 - 20513855
Alignment:
| Q |
1 |
cgaagtcatgaattt-aatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaa |
99 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20513627 |
cgaagtcatgaatttcaatttgacttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaa |
20513726 |
T |
|
| Q |
100 |
accatggtgacattgttattttattaaaatttcaaagtttttcttttgtcaaaatcatcactataatattaaataagctgccttcgattatagtgatgac |
199 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
20513727 |
accatggtgacaatgttattttattaaaatttcaaagtttttcttttgtcaaaatcatcactgtaatattaaataagttgccttcgattatagtgatgac |
20513826 |
T |
|
| Q |
200 |
tttgaaagatattcctaactatctatcta |
228 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
20513827 |
tttgaaagatattcctaactatctatcta |
20513855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 52615308 - 52615496
Alignment:
| Q |
1 |
cgaagtcatgaattt-aatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaa |
99 |
Q |
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|
||||||||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
52615308 |
cgaagtcatgaatttcaatttgacttgatatgatttattttaatggaaattagtttagtgttttgtccactatgtttgacttcacggtaagtttgacgaa |
52615407 |
T |
|
| Q |
100 |
accatggtgacattgttattttattaaaatttcaaagtttttcttttgtcaaaatcatcactataatattaaataagctgccttcgatt |
188 |
Q |
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||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||| |||| |
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| T |
52615408 |
accatggtgacatcgttattttattgaaatttcaaagtttatcttttgtcaaaatcatcactacaatattaaataagttgccttagatt |
52615496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 15099772 - 15099729
Alignment:
| Q |
145 |
ttgtcaaaatcatcactataatattaaataagctgccttcgatt |
188 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
15099772 |
ttgtcaaaatcatcactataatattaaataagttgccttagatt |
15099729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 23172601 - 23172414
Alignment:
| Q |
1 |
cgaagtcatgaattt-aatttggcttgatatgatttgttttaatggaatttagtttagtgttttgtccactatatttgacttcacggttagtttgacgaa |
99 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||| | || ||||||||| ||||||||||| |
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| T |
23172601 |
cgaagtcatgaatttcaatttgacttgatatgatttattttaatggaaattagtttagtgttttgtccagtatgtatg-cttcacggtaagtttgacgaa |
23172503 |
T |
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| Q |
100 |
accatggtgacattgttattttattaaaatttcaaagtttttcttttgtcaaaatcatcactataatattaaataagctgccttcgatt |
188 |
Q |
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|||| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||| |||| |
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| T |
23172502 |
accaaggtgacatcgttattttattgaaatttcaaagtttatcttttgtcaaaatcatcaccacaatattaaataagttgccttagatt |
23172414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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