View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3365_high_78 (Length: 250)
Name: NF3365_high_78
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_78 |
 | |
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| [»] chr4 (5 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0209 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 5237449 - 5237215
Alignment:
| Q |
17 |
tcaaggtgtgaaatcgtgaagatttaacacacaaaaaccagaaaaattgatcaaaagaagatcaattgaagaagaagatgcagcggaaaaacggttacaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5237449 |
tcaaggtgtgaaatcgtgaagatttaacacacaaaaaccagaaaaattgatcaaaagaagatcaattgaagaagaagatgcagcggaaaaacggttacaa |
5237350 |
T |
|
| Q |
117 |
accgtaatggatcgtaacaaactctttctctttggaaagagc-tctgataccatatcagaaatcaaaagaaagggaatgatatgaattctcattaccaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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|
| T |
5237349 |
accgtaatggatcgtaacaaactcttcctctttggaaagagcttctgataccatatcagaaatacaaagaaagggaatgatatgaattctcattactaag |
5237250 |
T |
|
| Q |
216 |
aatagagcttacaacaagtatatatactaataact |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5237249 |
aatagagcttacaacaagtatatatactaataact |
5237215 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 10636234 - 10635997
Alignment:
| Q |
14 |
gaatcaaggtgtgaaatcgtgaagatttaacacacaaaaaccagaaaaattgatcaaaagaagatcaattgaagaagaagatgcagcggaaaaacggtta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10636234 |
gaatcaaggtgtgaaatcgtgaagatttatcacacaaaaaccagaaaaattgatcaaacgaagatcaattgaagaagaagatgcagcggaaaaacggtta |
10636135 |
T |
|
| Q |
114 |
caaaccgtaatggatcgtaacaaactctttctctttggaaagagc-tctgataccatatcagaaatcaaaagaaagggaatgatatgaattctcattacc |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
10636134 |
caaaccgttatggatcgtaacaaactcttcctctttggaaagagcttctgataccatatcagaaatcaaaagaaaaggaatgaaatgaattctcattact |
10636035 |
T |
|
| Q |
213 |
aagaatagagcttacaacaagtatatatactaataact |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10636034 |
aagaatagagcttacaacaagtatatatactaataact |
10635997 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 169 - 250
Target Start/End: Complemental strand, 5242066 - 5241985
Alignment:
| Q |
169 |
tatcagaaatcaaaagaaagggaatgatatgaattctcattaccaagaatagagcttacaacaagtatatatactaataact |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
5242066 |
tatcagaaatcaaaagaaagggaatgatatgaattctcattactaagaatagagcttacaacaagtatatatactaataact |
5241985 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 10655465 - 10655382
Alignment:
| Q |
167 |
catatcagaaatcaaaagaaagggaatgatatgaattctcattaccaagaatagagcttacaacaagtatatatactaataact |
250 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
10655465 |
catatcagaaatcaaaagaaaaggaatgaaatgaattctcattactaagaatagagcttacaataagtatatatactaataact |
10655382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 10869610 - 10869527
Alignment:
| Q |
167 |
catatcagaaatcaaaagaaagggaatgatatgaattctcattaccaagaatagagcttacaacaagtatatatactaataact |
250 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
10869610 |
catatcagaaatcaaaagaaaaggaatgaaatgaattctcattactaagaatagagcttacaataagtatatatactaataact |
10869527 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 14812910 - 14812677
Alignment:
| Q |
14 |
gaatcaaggtgtgaaatcgtgaagatttaacacacaaaaaccagaaaaattgatcaaaagaagatcaattgaagaagaagatgcagcggaaaaacggtta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812910 |
gaatcaaggtgtgaaatcgtgaagatttaacacacaaaaaccagaaaaattgatcaaaagaagatcaattgaagaagaagatgcagcggaaaaacggtta |
14812811 |
T |
|
| Q |
114 |
caaaccgtaatggatcgtaacaaactctttctctttggaaagagc-tctgataccatatcagaaatcaaaagaaagggaatgatatgaattctcattacc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14812810 |
caaaccgtaatggatcgtaacaaactcttcctctttggaaagagcttctgataccataacagaaatcaaaagaaagg----gatatgaattctcattact |
14812715 |
T |
|
| Q |
213 |
aagaatagagcttacaacaagtatatatactaataact |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812714 |
aagaatagagcttacaacaagtatatatactaataact |
14812677 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 14817521 - 14817443
Alignment:
| Q |
172 |
cagaaatcaaaagaaagggaatgatatgaattctcattaccaagaatagagcttacaacaagtatatatactaataact |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14817521 |
cagaaatcaaaagaaagggaatgatatgaattctcattactaagaatagagcttacaacaagtatatatactaataact |
14817443 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 2357842 - 2357607
Alignment:
| Q |
14 |
gaatcaaggtgtgaaatcgtgaagatttaacacacaaaaaccagaaaaattgatcaaaagaagatcaattgaagaagaagatgcagcggaaaaacggtta |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2357842 |
gaatcaaggtgtgaaatcatgaagatttaacacacaaaa-ccagaaaaattgatcaaaagaagatcaattgaagaagaagatgcagcggaaaaacggtta |
2357744 |
T |
|
| Q |
114 |
caaaccgtaatggatcgtaacaaactctttctctttggaaagagc-tctgataccatatcagaaatcaaaagaaagggaatgatatgaattctcattacc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| || |||||||| |||||||||||| |
|
|
| T |
2357743 |
caaaccgtaatggatcgtaacaaactcttcctctttggaaagagcttctgataccatatcagaaatcagaaggaaatgaatgata-aaattctcattaca |
2357645 |
T |
|
| Q |
213 |
aagaatagagcttacaacaagtatatatactaataact |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2357644 |
aagaatagagcttacaacaagtatatatactaataact |
2357607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 2362252 - 2362202
Alignment:
| Q |
200 |
aattctcattaccaagaatagagcttacaacaagtatatatactaataact |
250 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2362252 |
aattctcattacaaagaatagagcttacaacaagtatatatactaataact |
2362202 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 187726 - 187582
Alignment:
| Q |
97 |
cagcggaaaaacggttacaaaccgtaatggatcgtaacaaactctttctctttggaaagagct-ctgataccatatcagaaatcaaaagaaagggaatga |
195 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||| || ||||||| |||||||| |||||||||||||| |||||||| |||| ||||||| |
|
|
| T |
187726 |
cagcggaaaaacgcttacaaaccgttatggatcgtaacaaacctttcctctttgaaaagagcttctgataccatatcaaaaatcaaaggaaaaggaatga |
187627 |
T |
|
| Q |
196 |
tatgaattctcattaccaagaatagagcttacaacaagtatatata |
241 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
187626 |
aatgaattatcattacttagaatagagcttacaac-agtatatata |
187582 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 621108 - 621028
Alignment:
| Q |
169 |
tatcagaaatcaaaagaaagggaatgatatgaattctcattaccaagaatagagcttacaacaagtatatatactaataac |
249 |
Q |
| |
|
|||||| ||||||| |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
621108 |
tatcaggaatcaaaggaaaaggaatgaaatgaattctcattacttagaatagagcttacaacaagtatatatactaataac |
621028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 614708 - 614635
Alignment:
| Q |
176 |
aatcaaaagaaagggaatgatatgaattctcattaccaagaatagagcttacaacaagtatatatactaataac |
249 |
Q |
| |
|
||||||| |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
614708 |
aatcaaaggaaaaggaatgaaatgaattctcattacttagaatagagcttacaacaagtatatatactaataac |
614635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 187800 - 187756
Alignment:
| Q |
14 |
gaatcaaggtgtgaaatcgtgaagatttaacacacaaaaaccaga |
58 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
187800 |
gaatcaaggtgtgaaatcgtgaagagttaacacacaaaaaccaga |
187756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 27492 - 27419
Alignment:
| Q |
176 |
aatcaaaagaaagggaatgatatgaattctcattaccaagaatagagcttacaacaagtatatatactaataac |
249 |
Q |
| |
|
||||||| |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27492 |
aatcaaaggaaaaggaatgaaatgaattctcattacttagaatagagcttacaacaagtatatatactaataac |
27419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 14579712 - 14579649
Alignment:
| Q |
97 |
cagcggaaaaacggttacaaaccgtaatggatcgtaacaaactctttctctttggaaagagctc |
160 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14579712 |
cagcggaaaaacggttacaaactgttatggatcgtaacaaactcttcctctttggaaagagctc |
14579649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 15996782 - 15996707
Alignment:
| Q |
97 |
cagcggaaaaacggttacaaaccgtaatggatcgtaacaaactctttctctttggaaagagctc-tgataccatat |
171 |
Q |
| |
|
||||| |||||||||||||||| || ||||||| |||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
15996782 |
cagcgaaaaaacggttacaaactgttatggatcataacaaactcttcctctttggaaagagctcatgataccatat |
15996707 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 8309428 - 8309358
Alignment:
| Q |
102 |
gaaaaacggttacaaaccgtaatggatcgtaacaaactctttctctttggaaagagctc-tgataccatat |
171 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
8309428 |
gaaaaacgattacaaaccgttatggatcgtaacaaactcttcctctttggaaagagctcgtgataccatat |
8309358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 8309516 - 8309458
Alignment:
| Q |
14 |
gaatcaaggtgtgaaatcgtgaagatttaacacacaaaaaccagaaaaattgatcaaaaga |
74 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||| || | ||||||||||||||| |
|
|
| T |
8309516 |
gaatcaaggtgtgaaatcgagaagattt-gcacacaaaaa-catagaaattgatcaaaaga |
8309458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 171
Target Start/End: Complemental strand, 9279927 - 9279857
Alignment:
| Q |
102 |
gaaaaacggttacaaaccgtaatggatcgtaacaaactctttctctttggaaagagctc-tgataccatat |
171 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
9279927 |
gaaaaacggttacagaccgttatggatcataacaaactcttcctctttggaaagagctcttgataccatat |
9279857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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