View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_82 (Length: 249)
Name: NF3365_high_82
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_82 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 3911571 - 3911328
Alignment:
| Q |
6 |
gtgagatgaagaaagagttggattttcaaagcttctgaaattattatgaatgagtaataataataataagctttagatgttcaatcacatcattgtttct |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3911571 |
gtgaaatgaagaaagagttggattttcaaagcttctgaaattattatgaatgagtaataataataataagctttagatgttcaatcacatcattgtttct |
3911472 |
T |
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| Q |
106 |
gccatacaaacataacatagctactagctagcaccaaagaaaaatgagagcaaaaaataatttcacatgtaaagttaaaaaaccatctgccaccatttct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3911471 |
gccatacaaacataacatagctactagctagcaccaaagaaaaatgagagcaaaaaataatttcacatgtaaagttaaaaaaccatctgccaccatttct |
3911372 |
T |
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| Q |
206 |
gctaaaaacctgcaaactctgcagaaacactttctttctttctc |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3911371 |
gctaaaaacctgcaaactctgcagaaacactttctttctttctc |
3911328 |
T |
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