View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_high_85 (Length: 246)
Name: NF3365_high_85
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_high_85 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 19396404 - 19396190
Alignment:
| Q |
13 |
cagaatacaaggaaaaatgtgtaaccacacttaaagaggcattgaaaaaagaccctaaattgaaagaaccaaagggtcttctaatggttttcatgctagt |
112 |
Q |
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| T |
19396404 |
cagaatacaaggaaaaatgtgtaaccacacttaaagaggcattgaaaaaagaccctaaattgaaagaaccaaagggtcttctaatggttttcatgctagt |
19396305 |
T |
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| Q |
113 |
tgccaagaatgaaattaacaacgcattcaacaaaaccgcgaacttgaaattcgcttccaaggaagaaaagggagcttatgaagattgtaaacagttgttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19396304 |
tgccaagaatgaaattaacaacgcattcaacaaaaccgcgaacttgaaattcgcttccaaggaagaaaagggagcttatgaagattgtaaacagttgttt |
19396205 |
T |
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| Q |
213 |
gaggatgctaaagaa |
227 |
Q |
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||||||||||||||| |
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| T |
19396204 |
gaggatgctaaagaa |
19396190 |
T |
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