View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_10 (Length: 487)
Name: NF3365_low_10
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 14672643 - 14672173
Alignment:
| Q |
1 |
ttgatgaaggagtattcaataaacattacatcagacaagttatcacttactttcgtccctcaaaacaattcactcggctttattaatgccatcgaagtta |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14672643 |
ttgatgaaggagtagtcaatcaacattacatcagacaagttatcacttactttcgtccctcaaaacaattcactcggctttattaatgccatcgaagtta |
14672544 |
T |
|
| Q |
101 |
tctctataccagatgacctcttccctgaccaaatagtagtaactctaaatccatcaggcttttttgaacatttctcaaaatctatcgttgaaacggtgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14672543 |
tctctataccagatgacctcttccctgaccaaatagtagtaactctaaatccatcaggcttttttgaacatttctcaaaatctatcgttgaaacggtgtc |
14672444 |
T |
|
| Q |
201 |
cagagtcagtattggtggtgcatctttgagtgacaaccttggaaggacttgggagaatgacggatattacttctaccaccccataaacagctccactagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14672443 |
cagagtcagtattggtggtgcatctttgagtgacaaccttggaaggacttgggagaatgacggatattacttctaccaccccataaacagctccactagt |
14672344 |
T |
|
| Q |
301 |
tctgatcttgttgtttctactaaccctgctacaataaagtactctattgttgctccaccattggtttatgctacagccagaaccttcaaagttgcatcac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14672343 |
tctgatcttgttgtttctactaaccctgctacaataaagtactctatttttggtccaccattggtttatgctacagccagaaccttcaaaattgcatcac |
14672244 |
T |
|
| Q |
401 |
agtcacagcgatccgatttaagttggcacttcattgtagatccgaacttcatgtattttgttcgggttcat |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14672243 |
agtcacagcgatccgatttaagttggcacttcattgtagatccgaacttcatgtattttgttcgggttcat |
14672173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 14678021 - 14677551
Alignment:
| Q |
1 |
ttgatgaaggagtattcaataaacattacatcagacaagttatcacttactttcgtccctcaaaacaattcactcggctttattaatgccatcgaagtta |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14678021 |
ttgatgaaggagtagtcaatcaacattacatcagacaagttatcacttactttcgtccctcaaaacaattcactcggctttattaatgccatcgaagtta |
14677922 |
T |
|
| Q |
101 |
tctctataccagatgacctcttccctgaccaaatagtagtaactctaaatccatcaggcttttttgaacatttctcaaaatctatcgttgaaacggtgta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14677921 |
tctctataccagatgacctcttccctgaccaaatagtagtaactctaaatccatcaggcttttttgaacatttctcaaaatctatcgttgaaacggtgtc |
14677822 |
T |
|
| Q |
201 |
cagagtcagtattggtggtgcatctttgagtgacaaccttggaaggacttgggagaatgacggatattacttctaccaccccataaacagctccactagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14677821 |
cagagtcagtattggtggtgcatctttgagtgacaaccttggaaggacttgggagaatgacggatattacttctaccaccccataaacagctccactagt |
14677722 |
T |
|
| Q |
301 |
tctgatcttgttgtttctactaaccctgctacaataaagtactctattgttgctccaccattggtttatgctacagccagaaccttcaaagttgcatcac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
14677721 |
tctgatcttgttgtttctactaaccctgctacaataaagtactctatttttggtccaccattggtttatgctacagccagaaccttcaaaattgcatcac |
14677622 |
T |
|
| Q |
401 |
agtcacagcgatccgatttaagttggcacttcattgtagatccgaacttcatgtattttgttcgggttcat |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14677621 |
agtcacagcgatccgatttaagttggcacttcattgtagatccgaacttcatgtattttgttcgggttcat |
14677551 |
T |
|
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