View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_100 (Length: 236)
Name: NF3365_low_100
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_100 |
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| [»] scaffold0536 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 8878460 - 8878306
Alignment:
| Q |
20 |
ctttaatgatgtcttaaccaagttattagactcggtgattaataaactatttgtttgaggacctcgaatttgaatcatgactaaaacaattactaattaa |
119 |
Q |
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| T |
8878460 |
ctttaatgatgtcttaaccaagttattagactcggtgattaataaactatttgtttgaggacctcgaatttgaataatgactaaaacaattactaattaa |
8878361 |
T |
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| Q |
120 |
ac-tttgaatattttgctaaatggtgcgaaatgttttcgcacaaatcacacgaag |
173 |
Q |
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| T |
8878360 |
acttttgagtattttgctaaatggtgcgaaatgttttcgcacaaatcacacgaag |
8878306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 12938715 - 12938651
Alignment:
| Q |
132 |
ttgctaaatggtgcgaaatgttttcgcacaaatcacacgaagcagcacaattaaaagccggttac |
196 |
Q |
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| T |
12938715 |
ttgctaaatggtgcgaaaatatttcgcacaaaccacacgaagaagcacaattaaaagcaggttac |
12938651 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 1399571 - 1399509
Alignment:
| Q |
132 |
ttgctaaatggtgcgaaatgttttcgcacaaatcacacgaagcagcacaattaaaagccggttac |
196 |
Q |
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| T |
1399571 |
ttgctaaatggtgcgaaatattttcgcacaaattacatgaagc--cacaattaaaagcaggttac |
1399509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 1162815 - 1162780
Alignment:
| Q |
139 |
atggtgcgaaatgttttcgcacaaatcacacgaagc |
174 |
Q |
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| T |
1162815 |
atggtgcgaaatattttcgcacaaatcacacgaagc |
1162780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 55225106 - 55225067
Alignment:
| Q |
132 |
ttgctaaatggtgcgaaatgttttcgcacaaatcacacga |
171 |
Q |
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| T |
55225106 |
ttgctaaatggtgcgaaatattttcgcacatatcacacga |
55225067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 47723338 - 47723375
Alignment:
| Q |
132 |
ttgctaaatggtgcgaaatgttttcgcacaaatcacac |
169 |
Q |
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| T |
47723338 |
ttgctaaatggtgcgaaatattttcgcacatatcacac |
47723375 |
T |
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Target: scaffold0536 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 3666 - 3698
Alignment:
| Q |
140 |
tggtgcgaaatgttttcgcacaaatcacacgaa |
172 |
Q |
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| T |
3666 |
tggtgcgaaatattttcgcacaaatcacacgaa |
3698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 24925911 - 24925875
Alignment:
| Q |
139 |
atggtgcgaaatgttttcgcacaaatcacacgaagca |
175 |
Q |
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| T |
24925911 |
atggtgcgaaatattttcgcacaaatcatacgaagca |
24925875 |
T |
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