View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3365_low_103 (Length: 234)

Name: NF3365_low_103
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3365_low_103
NF3365_low_103
[»] chr4 (6 HSPs)
chr4 (1-92)||(31942198-31942289)
chr4 (1-92)||(32001157-32001248)
chr4 (137-221)||(31942334-31942418)
chr4 (137-221)||(32001293-32001377)
chr4 (1-92)||(32004021-32004112)
chr4 (145-221)||(32004137-32004216)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 31942198 - 31942289
Alignment:
Q  1 gcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtc 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942198 gcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtc 31942289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 32001157 - 32001248
Alignment:
Q  1 gcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtc 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001157 gcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtc 32001248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 31942334 - 31942418
Alignment:
Q  137 tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgct 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31942334 tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgct 31942418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 32001293 - 32001377
Alignment:
Q  137 tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgct 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32001293 tgcatagtatgtatgctatgatgttatccaatgatgatcttgaatctccaacatccactttgaactttcctggaacaaccttgct 32001377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 32004021 - 32004112
Alignment:
Q  1 gcaagactttttcttaacaaaatcactccactcattcaaccttcacttccaccttgtcttgatattctcaaagcatggcaaagttcatggtc 92  Q
    ||||||||||| || ||||||||||| ||||||||||||||||||||||| | || |||||||||||| ||||||||| |||||||||||||    
T  32004021 gcaagacttttcctcaacaaaatcacaccactcattcaaccttcacttcccctttctcttgatattctaaaagcatggtaaagttcatggtc 32004112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 32004137 - 32004216
Alignment:
Q  145 atgtatgctatgatgttatccaatgatga---tcttgaatctccaacatccactttgaactttcctggaacaaccttgct 221  Q
    ||||||| |||||||| ||||||||||||   |||||||||||| ||||||||||||||||| || ||||||||| ||||    
T  32004137 atgtatgttatgatgtcatccaatgatgaaaatcttgaatctcctacatccactttgaacttcccgggaacaaccctgct 32004216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University