View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_108 (Length: 226)
Name: NF3365_low_108
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_108 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 162
Target Start/End: Original strand, 12199270 - 12199418
Alignment:
| Q |
14 |
cagagaagaaaggaattatgcagataaattgatgatgataaaaggaatgttctaacaaccttaggccacaccagcaaccatagcagaatgcatgtaaaag |
113 |
Q |
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| T |
12199270 |
cagagaagaaaggaattatgcagataaattgatgatgataaaaggaatgttctaacaaccttaggccacaccagcaaccatagcagaatgcatgtaaaag |
12199369 |
T |
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| Q |
114 |
taattatccaagaagaggaaaaaagtgagtgatataatattatccaaaa |
162 |
Q |
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| T |
12199370 |
taattatccaaaaaggggaagaaagtgagtgatacaatattatccaaaa |
12199418 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 36319349 - 36319316
Alignment:
| Q |
15 |
agagaagaaaggaattatgcagataaattgatga |
48 |
Q |
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| T |
36319349 |
agagaagaaaggaattatgcagataaattgatga |
36319316 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 24734272 - 24734180
Alignment:
| Q |
17 |
agaagaaaggaattatgcagataaattgatgatgataaaaggaatgttctaacaacct-taggccacaccagcaaccatagcagaatgcatgt |
108 |
Q |
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| T |
24734272 |
agaagaaagtaattatgcagtgaatttgacgatgataaaaggaatattacaacagcatataggctaaaccagcaaccataacagaatacatgt |
24734180 |
T |
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