View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_110 (Length: 225)
Name: NF3365_low_110
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_110 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 7814736 - 7814896
Alignment:
| Q |
18 |
ttttcaaacttaattcatattgacctgttgttaactcagtactcatttcagaatcataattgggatcaagtagtacaactgctctgccattctcccaagc |
117 |
Q |
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| T |
7814736 |
ttttcaaacttaattcatattgacctgttgttttctccttactcatttcataatcataattgggatcaagtagtacaactgctctgccattctcccaagc |
7814835 |
T |
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| Q |
118 |
ttcaaattctttcaattaaaaaggtttgctgagtagtatgtttgattgcttgcttgttctt |
178 |
Q |
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| T |
7814836 |
ttcaaattctttcaattaaaaaggttttctgagtagtatatttgtttgtttgcttgttctt |
7814896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 3255213 - 3255106
Alignment:
| Q |
71 |
tcataattgggatcaagtagtacaactgctctgccattctcccaagcttcaaattctttcaattaaaaaggtttgctgagtagtatgtttgattgcttgc |
170 |
Q |
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| T |
3255213 |
tcataattgggattgtgtagtagaacttctccgccattctcccaatcttcaaattctttttattaaaaaggtttgttgagtagtacatttgtttgtttgt |
3255114 |
T |
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| Q |
171 |
ttgttctt |
178 |
Q |
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|||||||| |
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| T |
3255113 |
ttgttctt |
3255106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 14435875 - 14435811
Alignment:
| Q |
105 |
cattctcccaagcttcaaattctttcaattaaaaaggtttgctgagtagtatgtttgattgcttg |
169 |
Q |
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| T |
14435875 |
cattgtcccatgcttcaaattcttttcattaaaaaggtttgctgagtaatatatttgtttgcttg |
14435811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 142
Target Start/End: Complemental strand, 7806118 - 7806063
Alignment:
| Q |
87 |
gtagtacaactgctctgccattctcccaagcttcaaattctttcaattaaaaaggt |
142 |
Q |
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| T |
7806118 |
gtagtaaaactgctccgccattgtcccaagcttcaaattcttttcattaaaaaggt |
7806063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 154
Target Start/End: Original strand, 7872059 - 7872116
Alignment:
| Q |
97 |
tgctctgccattctcccaagcttcaaattctttcaattaaaaaggtttgctgagtagt |
154 |
Q |
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| T |
7872059 |
tgctccgccattgtcccaagcttcaaattcttattattaaaaaggtatgttgagtagt |
7872116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 14438536 - 14438480
Alignment:
| Q |
105 |
cattctcccaagcttcaaattctttcaattaaaaaggtttgctgagtagtatgtttg |
161 |
Q |
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| T |
14438536 |
cattgtcccaagcttcaaattctttatattaataaggtttgttgagtaatatatttg |
14438480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 37996874 - 37996808
Alignment:
| Q |
112 |
ccaagcttcaaattctttcaattaaaaaggtttgctgagtagtatgtttgattgcttgcttgttctt |
178 |
Q |
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| T |
37996874 |
ccaagcttcaaattctttctattagaaaggtttgttgagtagtatgtttgtttgtttgctagttctt |
37996808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 2467824 - 2467742
Alignment:
| Q |
87 |
gtagtacaactgctctgccattctcccaagcttcaaattctttcaattaaaaaggtttgctgagtagtatgtttgattgcttg |
169 |
Q |
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| T |
2467824 |
gtagtagaactgctctgccactgtcgcaagcttcaaattgtttttattagaaaggtttgttgagtaatatatttgtttgcttg |
2467742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 14018469 - 14018530
Alignment:
| Q |
94 |
aactgctctgccattctcccaagcttcaaattctttcaattaaaaaggtttgctgagtagta |
155 |
Q |
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| T |
14018469 |
aactgctccgccattctccaaggctccaaattctttttattaaaaaggtttgttgagtagta |
14018530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 22620965 - 22621003
Alignment:
| Q |
105 |
cattctcccaagcttcaaattctttcaattaaaaaggtt |
143 |
Q |
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| T |
22620965 |
cattctcccaagcttcaaattcttttaattagaaaggtt |
22621003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 24005239 - 24005178
Alignment:
| Q |
110 |
tcccaagcttcaaattctttcaattaaaaaggtttgct--gagtagtatgtttgattgcttg |
169 |
Q |
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|||||||||||||||||||| |||| ||||||||| | |||||||||||||| ||||||| |
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| T |
24005239 |
tcccaagcttcaaattctttttattagaaaggtttgttgagagtagtatgtttgtttgcttg |
24005178 |
T |
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