View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_12 (Length: 478)
Name: NF3365_low_12
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 468
Target Start/End: Complemental strand, 31978557 - 31978110
Alignment:
| Q |
19 |
acactcatataaaaggagttgctcgtatctattcttataatatttggtgagtgtgaagatcacaatatgttttttaattgaattaactaaacaaacactt |
118 |
Q |
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| T |
31978557 |
acactcatataaaaggaattgctcgtatctattcttataatatttggtgagtgtgaagatcacaatatgttttttaattgaattaacaaaacaaacactt |
31978458 |
T |
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| Q |
119 |
ttgaggtttttctttgttgcaaacatttttgacgtgtttaatattgaaatatatattttatctttattctttaaacaataatattgcatggtaatatttc |
218 |
Q |
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| T |
31978457 |
ttgaggtttttctttgttgcaaacatttttgacgtgtttaatattgaaatatatattttatctttattctttaaacaataatattgcatggtaatatttc |
31978358 |
T |
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| Q |
219 |
ctcnnnnnnnatcatagagttaaactactttgattgataaaaaggacttatatgcgatatggattctcaaattttaatttcgtaattttagactcttagt |
318 |
Q |
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| T |
31978357 |
ctctttttttatcatagtgttaaactactttgattgataaaaagaacttatatgcgatatggattctcaaattttaatttcgtaattttaga--cttagt |
31978260 |
T |
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| Q |
319 |
ttaaaaaattgataaatatacaattatcattcaatttgatgacgtgacaataaattgttcactatcattcatttgcatcatttcaattgatcttcttaat |
418 |
Q |
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| T |
31978259 |
ttaaaaaatggataaatatacaattatcattcaatttgatgacgtgacaataaattgttcactatcattcatttgcatcatttcaattgatcttcttaat |
31978160 |
T |
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| Q |
419 |
ttaatatgctagttttgaagactttcaagaattagaacattcaccttcat |
468 |
Q |
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| T |
31978159 |
ttaatatgctagttttgaagactttcaagaattagaacattcaccttcat |
31978110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 10565660 - 10565596
Alignment:
| Q |
351 |
aatttgatgacgtgacaataaattgttcactatcattcatttgcatcatttcaattgatcttctt |
415 |
Q |
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| T |
10565660 |
aatttgatgatgtggcaataaattgttcactctcaacctcttgtatcatttcaattgatcttctt |
10565596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 377
Target Start/End: Complemental strand, 21634701 - 21634671
Alignment:
| Q |
347 |
attcaatttgatgacgtgacaataaattgtt |
377 |
Q |
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| T |
21634701 |
attcaatttgatgacgtgacaataaattgtt |
21634671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 33333925 - 33333856
Alignment:
| Q |
346 |
cattcaatttgatgacgtgacaataaattgttcactatcattcatttgcatcatttcaattgatcttctt |
415 |
Q |
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| T |
33333925 |
catttaatttgatgacatgacaataaattgtttacttccaacctcttgtatcatttcaattgatcttctt |
33333856 |
T |
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