View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3365_low_14 (Length: 459)

Name: NF3365_low_14
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3365_low_14
NF3365_low_14
[»] chr3 (16 HSPs)
chr3 (15-459)||(5159676-5160123)
chr3 (276-459)||(5155916-5156093)
chr3 (324-434)||(46479503-46479613)
chr3 (318-458)||(51942837-51942977)
chr3 (318-413)||(47397645-47397740)
chr3 (337-423)||(46544183-46544269)
chr3 (320-434)||(46497654-46497768)
chr3 (342-421)||(46538714-46538794)
chr3 (318-396)||(46490417-46490495)
chr3 (365-419)||(16025235-16025289)
chr3 (365-419)||(46526742-46526796)
chr3 (353-424)||(46549299-46549370)
chr3 (320-436)||(4581722-4581838)
chr3 (380-419)||(45902723-45902762)
chr3 (365-419)||(45884052-45884106)
chr3 (376-436)||(4614139-4614199)
[»] chr8 (3 HSPs)
chr8 (318-459)||(9692995-9693135)
chr8 (318-419)||(9676013-9676114)
chr8 (343-436)||(21464490-21464583)
[»] chr4 (4 HSPs)
chr4 (323-425)||(35155126-35155232)
chr4 (318-434)||(35162146-35162262)
chr4 (318-419)||(15555719-15555820)
chr4 (320-401)||(28286744-28286825)
[»] chr7 (6 HSPs)
chr7 (344-459)||(17708006-17708121)
chr7 (344-433)||(17717830-17717919)
chr7 (344-436)||(16721883-16721975)
chr7 (344-436)||(17698897-17698989)
chr7 (344-459)||(17735660-17735775)
chr7 (368-459)||(17744865-17744956)
[»] chr2 (4 HSPs)
chr2 (352-452)||(20358870-20358970)
chr2 (320-434)||(20169334-20169448)
chr2 (351-452)||(20144357-20144458)
chr2 (365-401)||(20155023-20155059)


Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 459
Target Start/End: Original strand, 5159676 - 5160123
Alignment:
Q  15 tatatgataccaaagcttctaaataccaagttgcataagatagatcgtcatcactgtctccttttaataaaaatactaattgnnnnnnnaagcacaaagt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  5159676 tatatgataccaaagcttctaaataccaagttgcataagatagatcgtcatcactgtctccttttaataaaaatactaattgtttttttaagcacaaagt 5159775  T
Q  115 ggtcatagttataatgtatgtccatcttgtatatttggaggtacgaatttctttatatttta---gtacaacttcatgactttggtgattggtaaaacta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    |||||||||||| |||||||||||||||||| |||    
T  5159776 ggtcatagttataatgtatgtccatcttgtatatttggaggtacgaattactttatattttgatggtacaacttcattactttggtgattggtaaagcta 5159875  T
Q  212 ttttgaataacaaaactttgttattcaaatgcctcttcaaataaactttcatgatcctttagcataatttcttctattgaattacttcaaaaaagaatct 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5159876 ttttgaataacaaaactttgttattcaaatgcctcttcaaataaactttcatgatcctttagcataatttcttctattgaattacttccaaaaagaatct 5159975  T
Q  312 ttttgttctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaat 411  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||    
T  5159976 atttgttctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgactaaagaagtgaatttatgggctgaaaaagagacaaat 5160075  T
Q  412 ggccttataaaaaaccttcttccacaaagatcagttgatagcttaacc 459  Q
    |||||||| ||| | |||||||| | ||||||||||||||| ||||||    
T  5160076 ggccttattaaagaacttcttcctctaagatcagttgataggttaacc 5160123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 276 - 459
Target Start/End: Original strand, 5155916 - 5156093
Alignment:
Q  276 taatttcttctattgaattacttcaaaaaagaatctttttgttctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgaca 375  Q
    |||||| |||||||||| |||||| ||||||||| | ||||||||||      | | |||||||||||||||| | ||||| |||||| ||||||||||     
T  5155916 taatttgttctattgaaatacttccaaaaagaatttatttgttctat------agtggatttttaaatttgatttggttttaaaggctgttgaagtgact 5156009  T
Q  376 aaagaagtgaatttatgggctaaaaacgagacaaatggccttataaaaaaccttcttccacaaagatcagttgatagcttaacc 459  Q
    ||||||| ||||||||||||| |||| ||||||||||||||||| ||| | |||||||| | ||||||||||||||||||||||    
T  5156010 aaagaagggaatttatgggctgaaaaagagacaaatggccttattaaagaacttcttcctccaagatcagttgatagcttaacc 5156093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 324 - 434
Target Start/End: Original strand, 46479503 - 46479613
Alignment:
Q  324 tgcataattgatttttaaatttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttataaaa 423  Q
    ||||||||||||||||||||||||||| ||||| |||||| |||||||||| || |||||||||| ||||||| |||| ||||||||||||||||| |||    
T  46479503 tgcataattgatttttaaatttgatatggttttaaaggctgttgaagtgaccaatgaagtgaattcatgggctgaaaaagagacaaatggccttattaaa 46479602  T
Q  424 aaccttcttcc 434  Q
     | ||||||||    
T  46479603 gaacttcttcc 46479613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 318 - 458
Target Start/End: Original strand, 51942837 - 51942977
Alignment:
Q  318 tctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggcctt 417  Q
    ||||||||||||||||||||||||||||||||| |||||  |||||   ||||||   || ||||||||  |||||| | |||| |||||||||||||||    
T  51942837 tctatttgcataattgatttttaaatttgatatggttttttaggctccagaagtgcgtaaggaagtgaacatatgggttgaaaaagagacaaatggcctt 51942936  T
Q  418 ataaaaaaccttcttccacaaagatcagttgatagcttaac 458  Q
    || ||| | ||| |||| | | |||||||||||||||||||    
T  51942937 attaaagaacttattcctccaggatcagttgatagcttaac 51942977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 47397740 - 47397645
Alignment:
Q  318 tctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatgg 413  Q
    ||||||||||||| ||||||||||||||||||| | ||| ||||||  ||||||| | |||||||| ||||||||||| ||||| |||||||||||    
T  47397740 tctatttgcataactgatttttaaatttgatatgggtttaaaggctgatgaagtggctaaagaagtaaatttatgggccaaaaatgagacaaatgg 47397645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 337 - 423
Target Start/End: Original strand, 46544183 - 46544269
Alignment:
Q  337 tttaaatttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttataaaa 423  Q
    |||| ||||||| ||||||| |||||| |||||| || |||||||||||||||||||||| |||| ||||||||||| |||||||||    
T  46544183 tttatatttgatgttgttttaaaggcttttgaagggagaaaagaagtgaatttatgggctgaaaaagagacaaatggtcttataaaa 46544269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 434
Target Start/End: Original strand, 46497654 - 46497768
Alignment:
Q  320 tatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttat 419  Q
    |||||| |||||||||||| |  |||||||| ||||| |||||| |||||||||  || |||||||||||||||||| |||  ||||||||||| |||||    
T  46497654 tatttggataattgattttaatttttgatatggttttaaaggctgttgaagtgaacaatgaagtgaatttatgggctgaaagagagacaaatggtcttat 46497753  T
Q  420 aaaaaaccttcttcc 434  Q
     ||| | ||||||||    
T  46497754 taaagaacttcttcc 46497768  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 421
Target Start/End: Original strand, 46538714 - 46538794
Alignment:
Q  342 atttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggct-aaaaacgagacaaatggccttataa 421  Q
    ||||||||||||||| |||||  ||||||||| ||||||||||||||| |||||| |||||  ||||||||||||||||||    
T  46538714 atttgatattgttttaaaggcacttgaagtgagaaaagaagtgaatttgtgggctgaaaaaaaagacaaatggccttataa 46538794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 396
Target Start/End: Original strand, 46490417 - 46490495
Alignment:
Q  318 tctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggct 396  Q
    |||||||| |||||||||||| || |||||||| ||||| ||||| | ||||||| | |||||||||||||||||||||    
T  46490417 tctatttgaataattgattttgaattttgatatggttttaaaggcaagtgaagtggccaaagaagtgaatttatgggct 46490495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 16025235 - 16025289
Alignment:
Q  365 ttgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttat 419  Q
    ||||||||||||| || |||||||||||||||||||| ||||||||||| |||||    
T  16025235 ttgaagtgacaaatgatgtgaatttatgggctaaaaaggagacaaatggtcttat 16025289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 46526796 - 46526742
Alignment:
Q  365 ttgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttat 419  Q
    |||||||||  ||||||||||||||||||||| |||| |||||||||||||||||    
T  46526796 ttgaagtgattaaagaagtgaatttatgggctgaaaaagagacaaatggccttat 46526742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 46549370 - 46549299
Alignment:
Q  353 ttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttataaaaa 424  Q
    |||| ||||| | ||||||| | ||||||||||||||||||||| |||| ||||||||||| ||||| ||||    
T  46549370 ttttaaaggcaagtgaagtggccaaagaagtgaatttatgggctgaaaaagagacaaatggtcttattaaaa 46549299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 436
Target Start/End: Complemental strand, 4581838 - 4581722
Alignment:
Q  320 tatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttat 419  Q
    ||||||| ||| ||||||||  ||||  ||| ||||| |||||||  ||||||    |||||||||||||||||||| |||| |||||||||||  | ||    
T  4581838 tatttgcttaactgatttttgtattttttatggttttaaaggctaccgaagtgcttcaagaagtgaatttatgggctgaaaaagagacaaatggtttaat 4581739  T
Q  420 aaaaaaccttcttccac 436  Q
    |||||| || |||||||    
T  4581738 aaaaaatctacttccac 4581722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 419
Target Start/End: Original strand, 45902723 - 45902762
Alignment:
Q  380 aagtgaatttatgggctaaaaacgagacaaatggccttat 419  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  45902723 aagtgaatttatgggctgaaaaagagacaaatggccttat 45902762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 45884106 - 45884052
Alignment:
Q  365 ttgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttat 419  Q
    |||||||||| || || ||||||||||||||| |||| ||||||||||| |||||    
T  45884106 ttgaagtgaccaatgacgtgaatttatgggctgaaaaagagacaaatggtcttat 45884052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 4614199 - 4614139
Alignment:
Q  376 aaagaagtgaatttatgggctaaaaacgagacaaatggccttataaaaaaccttcttccac 436  Q
    ||||||||||||||||||||| |||| |||||||| ||  | |||||||| || |||||||    
T  4614199 aaagaagtgaatttatgggctgaaaaagagacaaacggtttaataaaaaatctacttccac 4614139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 318 - 459
Target Start/End: Complemental strand, 9693135 - 9692995
Alignment:
Q  318 tctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggcctt 417  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||| |||| |||||| ||||||||    
T  9693135 tctatttgcataactgatttttaaatttgatat-gttttaaaggctattgaagtgactaaacaagtgaatttatgggctgaaaaagagacatatggcctt 9693037  T
Q  418 ataaaaaaccttcttccacaaagatcagttgatagcttaacc 459  Q
    || ||| |  ||||||| |||   |||||||| |||||||||    
T  9693036 attaaagaaattcttcctcaagcgtcagttgacagcttaacc 9692995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 318 - 419
Target Start/End: Complemental strand, 9676114 - 9676013
Alignment:
Q  318 tctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggcctt 417  Q
    |||||||| |||| |||||||||||||||||||| | || ||||||||||||||||| ||||| ||||||||||||||| |||| || ||| | ||||||    
T  9676114 tctatttgaataactgatttttaaatttgatattttatttaaggctattgaagtgactaaagaggtgaatttatgggctgaaaaagaaacatacggcctt 9676015  T
Q  418 at 419  Q
    ||    
T  9676014 at 9676013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 436
Target Start/End: Complemental strand, 21464583 - 21464490
Alignment:
Q  343 tttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttataaaaaaccttcttccac 436  Q
    |||||||||||||| |||||| | |||| |||| ||||||  |||||||||||| |||| ||||||||||| | ||| ||||| || |||||||    
T  21464583 tttgatattgttttaaaggctctcgaagcgacagaagaagcaaatttatgggctgaaaaagagacaaatggtcatatcaaaaatctacttccac 21464490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 323 - 425
Target Start/End: Original strand, 35155126 - 35155232
Alignment:
Q  323 ttgcataattgatttttaaatttgat----attgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggcctta 418  Q
    |||||||| |||||| ||||||||||    || ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  35155126 ttgcataactgatttataaatttgattgacatggttttgaaggctattgaagtgactaaagaagtgaatttatgggctaaaaaagagacaaatggcctta 35155225  T
Q  419 taaaaaa 425  Q
    | |||||    
T  35155226 ttaaaaa 35155232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 318 - 434
Target Start/End: Original strand, 35162146 - 35162262
Alignment:
Q  318 tctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggcctt 417  Q
    ||||||||||| | |||||| ||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||| |||| || ||||||||||||    
T  35162146 tctatttgcattactgatttgtaaatttgacatggttttaaaggctattgaagtgactaaagaagtgaatttatgggctgaaaaagaaacaaatggcctt 35162245  T
Q  418 ataaaaaaccttcttcc 434  Q
    || ||| | ||||||||    
T  35162246 attaaagaacttcttcc 35162262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 419
Target Start/End: Original strand, 15555719 - 15555820
Alignment:
Q  318 tctatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggcctt 417  Q
    |||| |||||||||| ||||| |||||||||||    ||  ||||| |||||||||| || ||||| |||| ||||| | |||| |||||||||||||||    
T  15555719 tctacttgcataatttattttgaaatttgatatgaaattttaggctgttgaagtgaccaatgaagtcaattcatgggttgaaaaggagacaaatggcctt 15555818  T
Q  418 at 419  Q
    ||    
T  15555819 at 15555820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 401
Target Start/End: Complemental strand, 28286825 - 28286744
Alignment:
Q  320 tatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaa 401  Q
    ||||| ||||| ||||||||  | ||||||| ||||  |||| | ||||||||||||||||||| |||||||||||| ||||    
T  28286825 tatttccataactgatttttgtacttgatatggtttcaaaggttgttgaagtgacaaaagaagtaaatttatgggctgaaaa 28286744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 344 - 459
Target Start/End: Original strand, 17708006 - 17708121
Alignment:
Q  344 ttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttataaaaaaccttcttccacaaagatc 443  Q
    |||||| || ||||||||||  |||||||| | |||||||||||||||||||| |||| |||||||| || ||||| ||||| ||||||||||| || ||    
T  17708006 ttgatactgatttgaaggctgatgaagtgagagaagaagtgaatttatgggctgaaaaggagacaaaagggcttattaaaaatcttcttccacacaggtc 17708105  T
Q  444 agttgatagcttaacc 459  Q
    |||||| |||||||||    
T  17708106 agttgacagcttaacc 17708121  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 433
Target Start/End: Original strand, 17717830 - 17717919
Alignment:
Q  344 ttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttataaaaaaccttcttc 433  Q
    |||||| || ||||||||||  |||||||| ||||||||||||| |||||||| |||| |||||||| || ||||| ||||| |||||||    
T  17717830 ttgatactgatttgaaggctgatgaagtgagaaaagaagtgaatgtatgggctgaaaaggagacaaaagggcttattaaaaatcttcttc 17717919  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 436
Target Start/End: Original strand, 16721883 - 16721975
Alignment:
Q  344 ttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttataaaaaaccttcttccac 436  Q
    |||||| |||||||||||||| ||||||   | ||||||||||||| |||||| |||| |||||||| || ||||| ||||| ||||||||||    
T  16721883 ttgatactgttttgaaggctaatgaagttggagaagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttccac 16721975  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 436
Target Start/End: Original strand, 17698897 - 17698989
Alignment:
Q  344 ttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttataaaaaaccttcttccac 436  Q
    |||||| |||||||||||||| ||||||   | ||||||||||||| |||||| |||| |||||||| || ||||| ||||| ||||||||||    
T  17698897 ttgatactgttttgaaggctaatgaagttggagaagaagtgaatttctgggctgaaaaggagacaaaagggcttattaaaaatcttcttccac 17698989  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 459
Target Start/End: Original strand, 17735660 - 17735775
Alignment:
Q  344 ttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttataaaaaaccttcttccacaaagatc 443  Q
    |||||| || |||| |||||  |||||||| |||||||||||||||||||||||| || |||||||| ||  |||| ||  | ||||||||||   | ||    
T  17735660 ttgatactggtttgcaggctgatgaagtgataaaagaagtgaatttatgggctaataaggagacaaaggggtttattaatgatcttcttccacgcgggtc 17735759  T
Q  444 agttgatagcttaacc 459  Q
    |||||| |||||||||    
T  17735760 agttgacagcttaacc 17735775  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 459
Target Start/End: Original strand, 17744865 - 17744956
Alignment:
Q  368 aagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttataaaaaaccttcttccacaaagatcagttgatagcttaacc 459  Q
    |||||| |||| ||||||||||||||||| ||||  ||||||| || |||||  || | |||||||||||  |||||||| | |||||||||    
T  17744865 aagtgagaaaacaagtgaatttatgggctgaaaagaagacaaaagggcttattcaagatcttcttccacacggatcagttaacagcttaacc 17744956  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 352 - 452
Target Start/End: Original strand, 20358870 - 20358970
Alignment:
Q  352 gttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttataaaaaaccttcttccacaaagatcagttgata 451  Q
    |||||||||| | |||||||||||||| |||||||||||||| || |||| ||||||| ||||||||| ||| | |||||||| | | || |||||||||    
T  20358870 gttttgaaggttgttgaagtgacaaaaaaagtgaatttatggtctgaaaaagagacaattggccttattaaagaacttcttcctcgaggaccagttgata 20358969  T
Q  452 g 452  Q
    |    
T  20358970 g 20358970  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 434
Target Start/End: Complemental strand, 20169448 - 20169334
Alignment:
Q  320 tatttgcataattgatttttaaatttgatattgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttat 419  Q
    ||||||||||  ||||| ||  ||||||| | |||||||||| | |||||||||||||| |||||||||||||| |  |||| ||||||| |||||||||    
T  20169448 tatttgcatagctgattattgtatttgatgtggttttgaaggttgttgaagtgacaaaaaaagtgaatttatggtcggaaaaagagacaattggccttat 20169349  T
Q  420 aaaaaaccttcttcc 434  Q
     ||| | ||||||||    
T  20169348 taaagaacttcttcc 20169334  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 452
Target Start/End: Original strand, 20144357 - 20144458
Alignment:
Q  351 tgttttgaaggctattgaagtgacaaaagaagtgaatttatgggctaaaaacgagacaaatggccttataaaaaaccttcttccacaaagatcagttgat 450  Q
    |||||| |||| | |||||||||||||| |||||||| ||||| |  |||| ||||||| ||||||||| ||| | |||||||| | | || ||||||||    
T  20144357 tgttttaaaggttgttgaagtgacaaaaaaagtgaatctatggtcggaaaaagagacaattggccttattaaagaacttcttcctcgaggaccagttgat 20144456  T
Q  451 ag 452  Q
    ||    
T  20144457 ag 20144458  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 20155059 - 20155023
Alignment:
Q  365 ttgaagtgacaaaagaagtgaatttatgggctaaaaa 401  Q
    |||||||||| |||||||||||||||||||| |||||    
T  20155059 ttgaagtgaccaaagaagtgaatttatgggccaaaaa 20155023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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