View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_16 (Length: 449)
Name: NF3365_low_16
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 2020315 - 2020736
Alignment:
| Q |
18 |
gttaagtgtccctttcaaaatcatgcagccttatgcttttcgatccaatcattggtttcgttcgtatttcatttacattgagttacagtaggtgttttag |
117 |
Q |
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| T |
2020315 |
gttaagtgtccctttcaaaatcatgcagctttatgcttttcgatccaatcattggtttcgttcgtatttcatttacagtgagttacagtaggtgttttag |
2020414 |
T |
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| Q |
118 |
ttagttagtgagctacaatctgtatagaaagtcaaagacttttcttgttgttttccagatcttttgtgctgtgaatttatggaggcttcctttttggatt |
217 |
Q |
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| T |
2020415 |
ttagttagtgtgctacaatctgtatagaaagtcaaagacttttcttgttgttttccagatcttttgtgctgtgaatttatggaggcttcctttttggatt |
2020514 |
T |
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| Q |
218 |
gtttccttgaagatgtagtagtaagatgcatgggtacattaagtataagtataacacattcatatttatattagtacttcacatcatatcttgaggtgca |
317 |
Q |
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| T |
2020515 |
gtttccttgaagatgtattagtaagatgcatgggtacattaagtataagtataatacattcatatttatattagtacttcacatcatatcttgaggtgca |
2020614 |
T |
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| Q |
318 |
agtttggtagtaagagattaatcttgtaacctcaagtgttgagttcgaatttcctcaagaaacagttgtaaaattatcagcgatgcaactttaattaata |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2020615 |
agtttggtagtaagagattaatcttgtaacctcaagtgttgagttagaatttcctcaagaaacagttgtaaaattatcagcgatgcaactttaattaata |
2020714 |
T |
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| Q |
418 |
aaaacaatacttcacatctctg |
439 |
Q |
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| T |
2020715 |
aaaacaatacttcacatctctg |
2020736 |
T |
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