View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_17 (Length: 447)
Name: NF3365_low_17
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 1116747 - 1117183
Alignment:
| Q |
1 |
cgcctcacaaccattcatctctcacttttcagcaagcaattcaacgccttcaggtcttaaacattcaacaatcccacttcaccannnnnnnaaaacaatt |
100 |
Q |
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| T |
1116747 |
cgcctcacaaccattcatctctcacttttcagcaagcaattcaacgccttcaggtcttaaacattcaacaatcccacttcaccatttttttaaaacaatt |
1116846 |
T |
|
| Q |
101 |
ttctgtaaattttgtgttttctgaagtctgtgagcactaaatttcaaaagggtcattttatatttcatttttaaagttaaaaaacctatcttttattgtt |
200 |
Q |
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| T |
1116847 |
ttctgtaaattttgtgttttctgaagtctgtgagcactaaatttcaaaagggtcattttatatttcatttttaaagttaaaaaacctatcttttattgtt |
1116946 |
T |
|
| Q |
201 |
gttgttgtcgtaggaatattgggcttctgttggatgttctataatgcaatgcagcaatactgaggtaactaactaacttgctgaatcctcattcatctat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1116947 |
gttgttgtcgtaggaatattgggcttctgttggatgttctataatgcaatgcagcaatactgaggtaactaactaacttgctgaatcctcattcatctat |
1117046 |
T |
|
| Q |
301 |
tcaattgtattctaaactagttgtttctttattgtcatcagtgcttacttgatagaatattatagtatagtgttgtttgattttgttatgcatcatagtt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1117047 |
tcaattgtattctaaactagttgtttctttattgtcatcagtgcttacttgatagaatattatagtatagtgttgtttgattttgttatgcatcatagtt |
1117146 |
T |
|
| Q |
401 |
aatctcatgtaatggtaaaatgctcatattgtctctg |
437 |
Q |
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| T |
1117147 |
aatctcatgtaatggtaaaatgctcatattgtctctg |
1117183 |
T |
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