View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_20 (Length: 418)
Name: NF3365_low_20
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 45017706 - 45017319
Alignment:
| Q |
19 |
aagaatcatcacataaacaaacacatcttataagaatcattgcctcaacacacagtacaatcaacatctaggattggcctttaattttatttttcctatg |
118 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45017706 |
aagaatcatcacataaacaaacacatgttataagaatcattgcctcaacacacagtacaatcaacatctaggattggcctttaattttatttttcttatg |
45017607 |
T |
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| Q |
119 |
gagcagatttgaactagctctactataaccttattgagattcagaatatatttgcatttcatgccaaagcactatnnnnnnnnnnnnnnnngaacatcat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45017606 |
gagcagatttgaactagctctactataaccttattgagattcagaatatatttgcatttcatgccaaagcactataaaataaaaacaaaaagaacatcat |
45017507 |
T |
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| Q |
219 |
gcatgcttgtacttaattaatcttggattatagaaatagctaaggttaatcaatgcaaatgagtnnnnnnnnnnnnnaagtaaaacactcacaataatgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45017506 |
gcatgcttgtacttaattaatcttggattatagaaatagctaaggttaatcaatgcaaatgagt----agagagagaaagtaaaacactcacaataatgt |
45017411 |
T |
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| Q |
319 |
ataagacccaggtaaggcttaatcattgtagaaagacagaaaaccatgagcaagaagcacacaaatgctccatatcccaaccttttcttctc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45017410 |
ataagacccaggtaaggcttaatcattgtagaaagacagaaaaccatgagcaagaagcacacaaatgctccatatcccaaccttttcttctc |
45017319 |
T |
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