View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_21 (Length: 409)
Name: NF3365_low_21
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_21 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 44560955 - 44561363
Alignment:
| Q |
1 |
ccactggactaccataaattgccgtaagaaacaaaactcgtcttccatgaaaaactacagaaaatcttttataaagcaagaattatccaaacaccctgct |
100 |
Q |
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| T |
44560955 |
ccactggactaccataaattgccgtaagaaacaaaactcgtcttccatgaaaaactacggaaaatcttctataaagcaagaattatccaaaccccctgct |
44561054 |
T |
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| Q |
101 |
tccacgctatcataatcccaccagagtaatctgtattctcggaaataacaaaaccatcaaaatccaacatcgtaatagatcttttaatctttagaggatg |
200 |
Q |
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| T |
44561055 |
tccacgctatcataatcccaccagagtaatctgtattctcggaaataacaaaaccatcaaaatccaacatcgtaatagatcttttaatctttagaggatg |
44561154 |
T |
|
| Q |
201 |
ggtacgcaactccataagaatcataacttcagggtagtaagaattcacaagtattcattgaagttttgtaatttgagtccaaacaagaaacaagtattgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44561155 |
ggtacgcaactccataagaatcataacttcagggtagtaagaattcacaagtattcattgaagttttgtaatttgagtccaaacaagaaacaagtattgt |
44561254 |
T |
|
| Q |
301 |
catttgatattcattcagcaaggaaaatgtaaatcatgttcagttgttcacatcccgaaatcaaaagggaattcaaatcacacggtttttgttctgctca |
400 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44561255 |
catttgatattcattcagcaaggaaaatgcaaatcatgttcagttgttcacatcccgaaatcaaaagggaattcaaatcacacggtttttgttctgctca |
44561354 |
T |
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| Q |
401 |
tattatatg |
409 |
Q |
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| T |
44561355 |
tattatatg |
44561363 |
T |
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