View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3365_low_23 (Length: 398)

Name: NF3365_low_23
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3365_low_23
NF3365_low_23
[»] chr4 (2 HSPs)
chr4 (12-379)||(55273143-55273507)
chr4 (38-107)||(2721370-2721440)
[»] chr2 (2 HSPs)
chr2 (36-107)||(41935667-41935739)
chr2 (35-107)||(32422882-32422955)
[»] chr5 (2 HSPs)
chr5 (37-107)||(15674121-15674192)
chr5 (35-107)||(33347216-33347289)
[»] chr3 (3 HSPs)
chr3 (38-107)||(10085409-10085479)
chr3 (38-107)||(10192329-10192399)
chr3 (36-107)||(19618574-19618646)
[»] chr8 (1 HSPs)
chr8 (40-107)||(2472427-2472495)
[»] chr7 (2 HSPs)
chr7 (32-107)||(48558822-48558898)
chr7 (37-108)||(1876186-1876258)
[»] scaffold0160 (1 HSPs)
scaffold0160 (37-107)||(26269-26340)
[»] chr1 (4 HSPs)
chr1 (37-107)||(22580210-22580281)
chr1 (37-107)||(29054749-29054820)
chr1 (37-107)||(48796430-48796501)
chr1 (52-108)||(7842459-7842516)
[»] chr6 (1 HSPs)
chr6 (36-107)||(33328489-33328561)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 379
Target Start/End: Original strand, 55273143 - 55273507
Alignment:
Q  12 atgaacacttagtgaccggaactaatattttttacaaacacgggtatggagatgggcaatgtagtaccatgtccattggtacccattgtcatcccttggt 111  Q
    ||||||||||||   ||| ||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  55273143 atgaacacttag---ccgaaactaatattttttacaaacatgg-tatggagatgggcaatgtagtaccatatccattggtacccattgtcatctcttggt 55273238  T
Q  112 tcatctttttcctcattttacctctgtatttcgatgatgaccatgccaattaccacctgcaaatcattcaaatgattgctgatttttcggctatgannnn 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  55273239 tcatctttttcctcattttacctctgtatttcgatgatgaccatgccaattaccacctgcaaatcattcaaatgattgctgatttttcggctatgatttc 55273338  T
Q  212 nnnnnnnnnnnnatgaggattacatgtttcaatgtttcaagtaataaaattgtgttaatgaaaaccaacaaaaattaaagctttttatgaattattattg 311  Q
                ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55273339 cttttcttttttatgaggattacatgtttcaatatttcaagtaataaaattgtgttaatgaaaaccaacaaaaattaaagctttttatgaattattattg 55273438  T
Q  312 aggttcggtgatc-acaacaacagagagttgttattgggttcattattttttcttttcgtcgagggctt 379  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55273439 aggttcggtgatcaacaacaacagagagttgttattgggttcattattttttcttttcgtcgagggctt 55273507  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 2721370 - 2721440
Alignment:
Q  38 attttttacaaacacgggtatggagatgggcaatgtagtaccatgtccatt-ggtacccattgtcatccct 107  Q
    ||||||||||||| |||||||||||||||  | ||||||||| | |||||| ||||||||||| |||||||    
T  2721370 attttttacaaacgcgggtatggagatggatactgtagtaccctatccattgggtacccattgccatccct 2721440  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 41935667 - 41935739
Alignment:
Q  36 atattttttacaaacacgggtatggagatgggcaatgtagtaccatgtccattgg-tacccattgtcatccct 107  Q
    ||||||||||||||| |||||||||||||||| | | ||||||| || ||||||| |||||||||||||||||    
T  41935667 atattttttacaaacgcgggtatggagatgggtactatagtaccctgcccattggatacccattgtcatccct 41935739  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 32422882 - 32422955
Alignment:
Q  35 aatattttttacaaacacgggtatggagatgggcaatgtagtaccatgtccatt-ggtacccattgtcatccct 107  Q
    ||||||||||| |||  ||||||||| || ||||| ||||||||| | |||||| ||||||||||| |||||||    
T  32422882 aatattttttataaatgcgggtatggggacgggcattgtagtaccgtatccattgggtacccattgccatccct 32422955  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 15674121 - 15674192
Alignment:
Q  37 tattttttacaaacacgggtatggagatgggcaatgtagtaccatgtccattgg-tacccattgtcatccct 107  Q
    |||||||||||||| ||||||||| |||||| | | ||||||| || ||||||| |||||||||||||||||    
T  15674121 tattttttacaaacgcgggtatggggatgggtactatagtaccctgcccattggatacccattgtcatccct 15674192  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 33347216 - 33347289
Alignment:
Q  35 aatattttttacaaacacgggtatggagatgggcaatgtagtaccatgtccatt-ggtacccattgtcatccct 107  Q
    |||||||||||||||| ||| ||||| |||||| | | ||||||| || ||||| ||||||||||| |||||||    
T  33347216 aatattttttacaaacgcggatatggggatgggtactatagtaccctgcccattgggtacccattgccatccct 33347289  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 10085409 - 10085479
Alignment:
Q  38 attttttacaaacacgggtatggagatgggcaatgtagtaccatgtccatt-ggtacccattgtcatccct 107  Q
    ||||||||||||| |||||||||||||||  | ||||||||| | |||||| ||||||||||| |||||||    
T  10085409 attttttacaaacgcgggtatggagatggatactgtagtaccctatccattgggtacccattgccatccct 10085479  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 10192329 - 10192399
Alignment:
Q  38 attttttacaaacacgggtatggagatgggcaatgtagtaccatgtccatt-ggtacccattgtcatccct 107  Q
    ||||||||||||| |||||||||||||||  | ||||||||| | |||||| ||||||||||| |||||||    
T  10192329 attttttacaaacgcgggtatggagatggatactgtagtaccctatccattgggtacccattgccatccct 10192399  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 19618646 - 19618574
Alignment:
Q  36 atattttttacaaacacgggtatggagatgggcaatgtagtaccatgtccattgg-tacccattgtcatccct 107  Q
    |||||||||| |||  ||||||||| || || |||||||||||| || ||||||| ||||||||| |||||||    
T  19618646 atattttttataaatgcgggtatggggacggacaatgtagtaccctgcccattggatacccattgccatccct 19618574  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 2472427 - 2472495
Alignment:
Q  40 tttttacaaacacgggtatggagatgggcaatgtagtaccatgtccattgg-tacccattgtcatccct 107  Q
    ||||||||||  |||||||||||||||||| ||||||||| |  ||||||| ||||||||| |||||||    
T  2472427 tttttacaaatgcgggtatggagatgggcattgtagtaccctacccattggatacccattgccatccct 2472495  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 48558822 - 48558898
Alignment:
Q  32 actaatattttttacaaacacgggtatggagatgggcaatgtagtaccatgtccattgg-tacccattgtcatccct 107  Q
    ||||| ||||||||||||  ||||||||| |||||| | | ||||||| || ||||||| |||||||||||||||||    
T  48558822 actaacattttttacaaatgcgggtatggggatgggtactatagtaccgtgcccattggatacccattgtcatccct 48558898  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 1876186 - 1876258
Alignment:
Q  37 tattttttacaaacacgggtatggagatgggcaatgtagtaccatgtccatt-ggtacccattgtcatccctt 108  Q
    |||||||||||||| ||||||||| |||||| |   ||||||| |  ||||| ||||||||||||||||||||    
T  1876186 tattttttacaaacgcgggtatggggatgggtaccatagtacccttcccattgggtacccattgtcatccctt 1876258  T

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Target: scaffold0160 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 26269 - 26340
Alignment:
Q  37 tattttttacaaacacgggtatggagatgggcaatgtagtaccatgtccatt-ggtacccattgtcatccct 107  Q
    |||||||||||||| ||||||||| |||||| | | ||||||| | |||||| ||||||||||| |||||||    
T  26269 tattttttacaaacgcgggtatggggatgggtactatagtaccctatccattgggtacccattgccatccct 26340  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 22580210 - 22580281
Alignment:
Q  37 tattttttacaaacacgggtatggagatgggcaatgtagtaccatgtccattgg-tacccattgtcatccct 107  Q
    |||||||||||||||||||||| | || ||||| ||||||||| |  |||| || |||||||||||||||||    
T  22580210 tattttttacaaacacgggtattgggacgggcattgtagtaccctacccataggatacccattgtcatccct 22580281  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 29054749 - 29054820
Alignment:
Q  37 tattttttacaaacacgggtatggagatgggcaatgtagtaccatgtccatt-ggtacccattgtcatccct 107  Q
    ||||||||| |||  | ||||||||||||||||||| |||||| | |||||| ||||||||||| |||||||    
T  29054749 tattttttataaatgcaggtatggagatgggcaatgcagtaccctatccattgggtacccattgccatccct 29054820  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 48796501 - 48796430
Alignment:
Q  37 tattttttacaaacacgggtatggagatgggcaatgtagtaccatgtccatt-ggtacccattgtcatccct 107  Q
    |||||||||||||| |||||||||  ||||| | | ||||||| || ||||| |||||||||||||||||||    
T  48796501 tattttttacaaacgcgggtatgggaatgggtactatagtaccctgcccattgggtacccattgtcatccct 48796430  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 7842516 - 7842459
Alignment:
Q  52 cgggtatggagatgggcaatgtagtaccatgtccattgg-tacccattgtcatccctt 108  Q
    ||||||||| |||||||| ||||||||| | |||||||| ||||||||| ||||||||    
T  7842516 cgggtatggggatgggcattgtagtaccctatccattgggtacccattgccatccctt 7842459  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 33328561 - 33328489
Alignment:
Q  36 atattttttacaaacacgggtatggagatgggcaatgtagtaccatgtccatt-ggtacccattgtcatccct 107  Q
    |||||||||| |||  |||||||||||| || || ||||||||| | |||||| ||||||||||| |||||||    
T  33328561 atattttttataaatgcgggtatggagacggacattgtagtaccctatccattgggtacccattgccatccct 33328489  T

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