View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3365_low_26 (Length: 358)
Name: NF3365_low_26
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 344
Target Start/End: Original strand, 5288799 - 5289130
Alignment:
| Q |
15 |
aaaaagaacgtacaactttgtttggaagtcacaagtgaaaagaatggagagctttggaggcacaagagttgaagagaattgaagacnnnnnnn--ataaa |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
5288799 |
aaaaagagcgtacaactttgtttggaagtcacaagtgaaaagaatggagagttttggaggcacaagagttgaagagaaatgaagactttttttttataaa |
5288898 |
T |
|
| Q |
113 |
agttagtttttcttgatttgagagtattgataaacaggtgaaaatgattcaacaatttatttaaaatcctctaaaatcttctcttaatatgtttttaaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5288899 |
agttagtttttcttgatttgagagtattgataaacaggtgaaaatgattcaacaatttatttaaaatcctctaaaatcttctcttaatatgtttttaaat |
5288998 |
T |
|
| Q |
213 |
tctaccatattgaagtgttttagtccaatgaaacaaaaataaaatttccatgcaagatgagggtttactctttctatttttgtttctctcctccctttat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5288999 |
tctaccatattgaagtgttttagtccaatgaaacaaaaataaaatttccatgcaagatgagggtttactctttctatttttgtttctctcctccctttat |
5289098 |
T |
|
| Q |
313 |
catgaaagtcttcatctcccttctatttccat |
344 |
Q |
| |
|
| |||||||||||| |||||||| |||||||| |
|
|
| T |
5289099 |
cctgaaagtcttcacctcccttccatttccat |
5289130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University