View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_28 (Length: 354)
Name: NF3365_low_28
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 336
Target Start/End: Complemental strand, 38877825 - 38877502
Alignment:
| Q |
13 |
aatatgtagtattaacttatagaaatttagattccatcaatagatttcagaacttctcctaggactagtccccattgagtccaatgagtgccaccctgca |
112 |
Q |
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| T |
38877825 |
aatatgtagtattaacttatagaaatttagattccatcaatagatttcagaacttctcctaggactagtccccattgagtccaatgagtgccaccctgca |
38877726 |
T |
|
| Q |
113 |
tttgaaaaacaaatgaagttaatatgtaatagtgaatcatacccatatgtagtatattgttgttcgatgcaaaaccaacatgcctggcaaaatacagcaa |
212 |
Q |
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| T |
38877725 |
tttgaaaaacaaatgaagttaatatgtaatagtgaatcatacccatatgtagtatattgttgtttgatgcaaaaccaacatgcctggcaaaatacagcaa |
38877626 |
T |
|
| Q |
213 |
atggctctctaagaggtccatcgcatgaaagctcactagtactcccatcaatgaaggttccatcggcaaagataacctgagaagagtaatatcaaagagt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38877625 |
atggctctctaagaggtccatcgcatgaaagctcactagtactcccatcaatgaaggttccatcggcaaagataacctgagaagagtaatattaaagagt |
38877526 |
T |
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| Q |
313 |
tattaatatctggtaggactttgg |
336 |
Q |
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|||||||||||||||||||||||| |
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| T |
38877525 |
tattaatatctggtaggactttgg |
38877502 |
T |
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