View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3365_low_29 (Length: 353)
Name: NF3365_low_29
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3365_low_29 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 92 - 339
Target Start/End: Complemental strand, 9695786 - 9695539
Alignment:
| Q |
92 |
gacttggacttctcagatccttcttcctccgaagcattcttctcagtctaatgcaccaaaattagctcaaatcagcaaacacaagatataaatccaagta |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9695786 |
gacttggacttctcagatccttcttcctccgaagcattcttctcagtctaatgcaccaaaattagctcaaatcagcaaacacgagatataaatccaagta |
9695687 |
T |
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| Q |
192 |
aaatcagaacacggaaaaatcagagtaacagaaaagtgataaaagtaattacaattcccatattgtaagcacgcattgtcttctcatactcctccttcaa |
291 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9695686 |
aaatcagaacacggaaaaatcaaagtcacagaaaagtgataaaagtaattacaattcccatattgtaagcacgcattgttttctcatactcctccttcaa |
9695587 |
T |
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| Q |
292 |
tttatcagccttagcaatgaatggagccttatcctaaaatacacaaat |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9695586 |
tttatcagccttagcaatgaatggagccttatcctaaaatacacaaat |
9695539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 98 - 336
Target Start/End: Original strand, 30439777 - 30440015
Alignment:
| Q |
98 |
gacttctcagatccttcttcctccgaagcattcttctcagtctaatgcaccaaaattagctcaaatcagcaaacacaagatataaatccaagtaaaatca |
197 |
Q |
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||||| ||| ||||||||||||| |||||||| ||||| |||||| || ||||||||| ||||||||||||| | ||||||||||||||||||| | |
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| T |
30439777 |
gacttatcaaatccttcttcctctgaagcattattctcggtctaagacatcaaaattagttcaaatcagcaaaaaggtaatataaatccaagtaaaataa |
30439876 |
T |
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| Q |
198 |
gaacacggaaaaatcagagtaacagaaaagtgataaaagtaattacaattcccatattgtaagcacgcattgtcttctcatactcctccttcaatttatc |
297 |
Q |
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| T |
30439877 |
gaacagtaaaaattcacagtaacagagaagttataaaagtaattacaattcccatattgtacgcaagcattgtctcctcatactcctccttgaacttctc |
30439976 |
T |
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| Q |
298 |
agccttagcaatgaatggagccttatcctaaaatacaca |
336 |
Q |
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| T |
30439977 |
aaacttagcaatgaatcgagccttatcctaaaatacaca |
30440015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0405 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 92 - 336
Target Start/End: Original strand, 14704 - 14948
Alignment:
| Q |
92 |
gacttggacttctcagatccttcttcctccgaagcattcttctcagtctaatgcaccaaaattagctcaaatcagcaaacacaagatataaatccaagta |
191 |
Q |
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||||| ||||| | |||||||||||| |||||||||||||||||||||||| || ||||||||| ||||||||||||| | ||||||||||||||| |
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| T |
14704 |
gacttagacttatgagatccttcttcttccgaagcattcttctcagtctaagacatcaaaattagttcaaatcagcaaaaagttaatataaatccaagta |
14803 |
T |
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| Q |
192 |
aaatcagaacacggaaaaatcagagtaacagaaaagtgataaaagtaattacaattcccatattgtaagcacgcattgtcttctcatactcctccttcaa |
291 |
Q |
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|||| ||| || |||| ||| |||||||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14804 |
aaataagagcagtaaaaattcacagtaacagaaaagttatagaaataattacaattcccatgttgtaagcacgcattgtcttctcatactcctccttcaa |
14903 |
T |
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| Q |
292 |
tttatcagccttagcaatgaatggagccttatcctaaaatacaca |
336 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
14904 |
cttctcagccttagcaatgaatggagccttatcctaaaatacaca |
14948 |
T |
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