View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3365_low_33 (Length: 350)

Name: NF3365_low_33
Description: NF3365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3365_low_33
NF3365_low_33
[»] chr1 (6 HSPs)
chr1 (1-198)||(9955296-9955493)
chr1 (230-335)||(9955525-9955630)
chr1 (105-177)||(50004930-50005002)
chr1 (72-177)||(26793766-26793871)
chr1 (288-334)||(11022373-11022419)
chr1 (266-335)||(40119146-40119214)
[»] chr7 (5 HSPs)
chr7 (72-172)||(24429704-24429804)
chr7 (72-177)||(41482421-41482526)
chr7 (268-335)||(28711600-28711667)
chr7 (275-335)||(47953496-47953556)
chr7 (123-177)||(44107785-44107839)
[»] scaffold0020 (1 HSPs)
scaffold0020 (262-335)||(132973-133046)
[»] chr5 (5 HSPs)
chr5 (262-335)||(33365529-33365602)
chr5 (263-335)||(28298986-28299058)
chr5 (267-335)||(21063501-21063569)
chr5 (115-177)||(32529420-32529482)
chr5 (275-335)||(12676469-12676529)
[»] chr2 (7 HSPs)
chr2 (72-177)||(40626478-40626583)
chr2 (105-169)||(5020233-5020297)
chr2 (128-177)||(40054520-40054569)
chr2 (278-334)||(27082207-27082263)
chr2 (105-156)||(18665190-18665241)
chr2 (281-334)||(27016164-27016217)
chr2 (105-177)||(6457607-6457679)
[»] chr4 (4 HSPs)
chr4 (106-158)||(19181448-19181500)
chr4 (276-335)||(2182968-2183027)
chr4 (261-335)||(38646016-38646089)
chr4 (105-177)||(43481339-43481410)
[»] chr8 (7 HSPs)
chr8 (276-335)||(12822297-12822356)
chr8 (262-317)||(27779384-27779439)
chr8 (115-161)||(556804-556850)
chr8 (260-334)||(18312486-18312559)
chr8 (139-177)||(31734325-31734363)
chr8 (128-177)||(9028691-9028740)
chr8 (72-161)||(39283732-39283821)
[»] chr6 (3 HSPs)
chr6 (79-166)||(18596636-18596723)
chr6 (71-156)||(8547435-8547520)
chr6 (79-160)||(8573796-8573877)
[»] chr3 (3 HSPs)
chr3 (262-335)||(35161973-35162046)
chr3 (281-334)||(53220688-53220741)
chr3 (111-161)||(40416973-40417023)


Alignment Details
Target: chr1 (Bit Score: 141; Significance: 7e-74; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 9955296 - 9955493
Alignment:
Q  1 atcgagaagcaacaaggtttaaggcttgagttgtgactagagnnnnnnntgagacgcttgaaagagttttactatcaggttgctgacctaccaaaatcta 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9955296 atcgagaagcaacaaggtttaaggcttgagttgtgaccagagaaaaaaatgagacgcttgaaagagttttactatcaggttgctgacctaccaaaatcta 9955395  T
Q  101 actgtaaaattaataaagggtgagtaagataggattaaaaataggtttaatttatcattttttactggtgcaccaaatcaagctatatacaattactc 198  Q
    || |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||  |||||||||  |||||||    
T  9955396 accgtaaaattaacaaagggtgagtaagatagtattaaaaataggtttaatttatcattttttaccggtgcaccaaatagagctatatatgattactc 9955493  T

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Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 230 - 335
Target Start/End: Original strand, 9955525 - 9955630
Alignment:
Q  230 gaacctatatgtcggcgccttttgaacaaaaccagggccgttctctggcaagcgcaaagagctctacggagccgggcctccaatttattgggatctcaat 329  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||| ||||||||||| |||||||    
T  9955525 gaacctatatgccggcgccttttgaacaaaaccagggccgttctttggcaagcacaaagagctctacggagtcggacctctaatttattggggtctcaat 9955624  T
Q  330 tatttg 335  Q
    ||||||    
T  9955625 tatttg 9955630  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 50004930 - 50005002
Alignment:
Q  105 taaaattaataaagggtgagtaagataggattaaaaataggtttaatttatcattttttactggtgcaccaaa 177  Q
    ||||| ||| ||||||||| || |||||||||| |||||||||||| ||||| ||||||| ||||||||||||    
T  50004930 taaaaataacaaagggtgattaggataggattagaaataggtttaaattatccttttttattggtgcaccaaa 50005002  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 26793871 - 26793766
Alignment:
Q  72 ctatcaggttgctgacctaccaaaatctaactgtaaaattaataaagggtgagtaagataggattaaaaataggtttaatttatcattttttactggtgc 171  Q
    ||||||||||||| ||| ||||||| ||||   ||||| ||| ||||| ||| || |||||||||| ||||| |||||| ||||| |||| || ||||||    
T  26793871 ctatcaggttgctaacccaccaaaaactaagaataaaaataacaaaggttgattaggataggattagaaataagtttaagttatccttttctattggtgc 26793772  T
Q  172 accaaa 177  Q
    ||||||    
T  26793771 accaaa 26793766  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 11022419 - 11022373
Alignment:
Q  288 gagctctacggagccgggcctccaatttattgggatctcaattattt 334  Q
    |||||||||||||||| ||||||||||||| ||| ||||||||||||    
T  11022419 gagctctacggagccgagcctccaatttatgggggtctcaattattt 11022373  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 335
Target Start/End: Original strand, 40119146 - 40119214
Alignment:
Q  266 gccgttctctggcaagcgcaaagagctctacggagccgggcctccaatttattgggatctcaattatttg 335  Q
    |||||||| ||||| |||||| |||||||||||| ||| ||||||||||||| |||  ||||||||||||    
T  40119146 gccgttctttggcatgcgcaaggagctctacgga-ccgagcctccaatttataggggcctcaattatttg 40119214  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 24429804 - 24429704
Alignment:
Q  72 ctatcaggttgctgacctaccaaaatctaactgtaaaattaataaagggtgagtaagataggattaaaaataggtttaatttatcattttttactggtgc 171  Q
    ||||||||||||| ||| ||||||| ||||   ||||| ||| ||||||||||||||||||||||| |||||| ||||| |||||||||| || ||||||    
T  24429804 ctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaagataggattataaatagttttaaattatcattttctattggtgc 24429705  T
Q  172 a 172  Q
    |    
T  24429704 a 24429704  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 41482421 - 41482526
Alignment:
Q  72 ctatcaggttgctgacctaccaaaatctaactgtaaaattaataaagggtgagtaagataggattaaaaataggtttaatttatcattttttactggtgc 171  Q
    ||||||||||||| ||| ||||||| ||||   ||||| ||| |||||||||||| |||| |||||||||||||||||| ||||| |||  |  ||||||    
T  41482421 ctatcaggttgctaacccaccaaaaactaaggataaaaataacaaagggtgagtaggatatgattaaaaataggtttaagttatcctttcctgttggtgc 41482520  T
Q  172 accaaa 177  Q
    ||||||    
T  41482521 accaaa 41482526  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 335
Target Start/End: Original strand, 28711600 - 28711667
Alignment:
Q  268 cgttctctggcaagcgcaaagagctctacggagccgggcctccaatttattgggatctcaattatttg 335  Q
    |||||| || ||||||||||||||||||||||||||  |||||||||||| | | | |||||||||||    
T  28711600 cgttctttgacaagcgcaaagagctctacggagccgaacctccaatttatagaggtttcaattatttg 28711667  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 47953556 - 47953496
Alignment:
Q  275 tggcaagcgcaaagagctctacggagccgggcctccaatttattgggatctcaattatttg 335  Q
    ||||||| |||| ||||||||||||| ||||||||||||||||  ||  ||||||||||||    
T  47953556 tggcaagtgcaatgagctctacggagtcgggcctccaatttatgcgggcctcaattatttg 47953496  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 44107839 - 44107785
Alignment:
Q  123 agtaagataggattaaaaataggtttaatttatcattttttactggtgcaccaaa 177  Q
    |||||||||||||||  || ||||||||||||||||||  || ||||||||||||    
T  44107839 agtaagataggattaggaaaaggtttaatttatcatttcctattggtgcaccaaa 44107785  T

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Target: scaffold0020 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 132973 - 133046
Alignment:
Q  262 cagggccgttctctggcaagcgcaaagagctctacggagccgggcctccaatttattgggatctcaattatttg 335  Q
    |||||||||||  ||||| |||||| |||||||||||||||| ||||||||||||| |||  ||||||||||||    
T  132973 cagggccgttccttggcatgcgcaaggagctctacggagccgagcctccaatttataggggcctcaattatttg 133046  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 262 - 335
Target Start/End: Complemental strand, 33365602 - 33365529
Alignment:
Q  262 cagggccgttctctggcaagcgcaaagagctctacggagccgggcctccaatttattgggatctcaattatttg 335  Q
    |||||||||||| |||||| | |||||||||||||||||| |||||||||||||||  || ||||| |||||||    
T  33365602 cagggccgttctttggcaaacacaaagagctctacggagctgggcctccaatttatgagggtctcagttatttg 33365529  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 28298986 - 28299058
Alignment:
Q  263 agggccgttctctggcaagcgcaaagagctctacggagccgggcctccaatttattgggatctcaattatttg 335  Q
    ||||||||||  ||||||||||||  |||||||||||| |||||||||||||||| |||  ||||||||||||    
T  28298986 agggccgttccttggcaagcgcaagaagctctacggagtcgggcctccaatttatgggggcctcaattatttg 28299058  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 21063501 - 21063569
Alignment:
Q  267 ccgttctctggcaagcgcaaagagctctacggagccgggcctccaatttattgggatctcaattatttg 335  Q
    ||||||| |||||||||||||||  ||||| ||||||| |||| ||||||| ||| ||| |||||||||    
T  21063501 ccgttctttggcaagcgcaaagaattctacagagccggacctctaatttatgggggtcttaattatttg 21063569  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 32529420 - 32529482
Alignment:
Q  115 aaagggtgagtaagataggattaaaaataggtttaatttatcattttttactggtgcaccaaa 177  Q
    ||||| ||| ||||||| ||||| ||||| |||||||||||  ||||||| ||||||||||||    
T  32529420 aaaggatgaataagatatgattagaaataagtttaatttattcttttttattggtgcaccaaa 32529482  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 12676529 - 12676469
Alignment:
Q  275 tggcaagcgcaaagagctctacggagccgggcctccaatttattgggatctcaattatttg 335  Q
    ||||| |||||| | ||||||||||||||  ||||| |||||| ||| |||||||||||||    
T  12676529 tggcatgcgcaaggtgctctacggagccgaacctccgatttatgggggtctcaattatttg 12676469  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 177
Target Start/End: Complemental strand, 40626583 - 40626478
Alignment:
Q  72 ctatcaggttgctgacctaccaaaatctaactgtaaaattaataaagggtgagtaagataggattaaaaataggtttaatttatcattttttactggtgc 171  Q
    ||||||||||| | ||| |||||||| |||   ||||| |||||||||||||||| |||||||||| |||||  ||||| ||||| |||  || ||||||    
T  40626583 ctatcaggttgttaacccaccaaaatttaaggataaaaataataaagggtgagtaggataggattagaaatatatttaaattatcctttcctattggtgc 40626484  T
Q  172 accaaa 177  Q
    ||||||    
T  40626483 accaaa 40626478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 5020297 - 5020233
Alignment:
Q  105 taaaattaataaagggtgagtaagataggattaaaaataggtttaatttatcattttttactggt 169  Q
    ||||| ||| ||||||||||||||||||||||||||||  ||||||| |||| ||||||| ||||    
T  5020297 taaaagtaacaaagggtgagtaagataggattaaaaatgagtttaatgtatccttttttattggt 5020233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 40054520 - 40054569
Alignment:
Q  128 gataggattaaaaataggtttaatttatcattttttactggtgcaccaaa 177  Q
    ||||||||||| |||||||||| ||||||||||| || ||||||||||||    
T  40054520 gataggattaacaataggtttagtttatcattttctattggtgcaccaaa 40054569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 27082207 - 27082263
Alignment:
Q  278 caagcgcaaagagctctacggagccgggcctccaatttattgggatctcaattattt 334  Q
    ||||||||| |||||||||||||||| ||||||||||||| |||  || ||||||||    
T  27082207 caagcgcaaggagctctacggagccgagcctccaatttatgggggccttaattattt 27082263  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 18665241 - 18665190
Alignment:
Q  105 taaaattaataaagggtgagtaagataggattaaaaataggtttaatttatc 156  Q
    ||||||||| |||||||||||||||||  |||| |||||||||||| |||||    
T  18665241 taaaattaacaaagggtgagtaagatattattagaaataggtttaagttatc 18665190  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 27016164 - 27016217
Alignment:
Q  281 gcgcaaagagctctacggagccgggcctccaatttattgggatctcaattattt 334  Q
    |||||| |||||||||||||||| ||||||||||||| |||  || ||||||||    
T  27016164 gcgcaaggagctctacggagccgagcctccaatttatgggggccttaattattt 27016217  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 6457679 - 6457607
Alignment:
Q  105 taaaattaataaagggtgagtaagataggattaaaaataggtttaatttatcattttttactggtgcaccaaa 177  Q
    ||||| ||| ||||||||  ||||||| ||||  |||| | |||||||||||||||| || ||||||||||||    
T  6457679 taaaaataacaaagggtggataagatatgattggaaattgatttaatttatcattttctattggtgcaccaaa 6457607  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 19181448 - 19181500
Alignment:
Q  106 aaaattaataaagggtgagtaagataggattaaaaataggtttaatttatcat 158  Q
    |||| ||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  19181448 aaaaataataaaggatgagtaggataggattagaaataggtttaatttatcat 19181500  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 2182968 - 2183027
Alignment:
Q  276 ggcaagcgcaaagagctctacggagccgggcctccaatttattgggatctcaattatttg 335  Q
    |||||| |||||| ||||||||||| ||| |||||||||||| |||  ||||||||||||    
T  2182968 ggcaagtgcaaagtgctctacggagtcggacctccaatttatgggggcctcaattatttg 2183027  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 38646089 - 38646016
Alignment:
Q  261 ccagggccgttctctggcaagcgcaaagagctctacggagccgggcctccaatttattgggatctcaattatttg 335  Q
    ||||||||||||  || || | |||| |||||||||||||||| ||||||||||||| ||| | |||||||||||    
T  38646089 ccagggccgttccttgccatgagcaaggagctctacggagccgagcctccaatttatgggggt-tcaattatttg 38646016  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 43481339 - 43481410
Alignment:
Q  105 taaaattaataaagggtgagtaagataggattaaaaataggtttaatttatcattttttactggtgcaccaaa 177  Q
    ||||| ||||||| ||||| |||||| |||||| ||||  |||||||||||| ||| ||| ||||||||||||    
T  43481339 taaaaataataaaaggtgaataagat-ggattagaaatgagtttaatttatcctttcttattggtgcaccaaa 43481410  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 12822297 - 12822356
Alignment:
Q  276 ggcaagcgcaaagagctctacggagccgggcctccaatttattgggatctcaattatttg 335  Q
    |||||| |||||| ||||||||||||||| |||||||||||| |||  ||||||||||||    
T  12822297 ggcaagtgcaaagtgctctacggagccggacctccaatttataggggcctcaattatttg 12822356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 317
Target Start/End: Complemental strand, 27779439 - 27779384
Alignment:
Q  262 cagggccgttctctggcaagcgcaaagagctctacggagccgggcctccaatttat 317  Q
    ||||||||||||  |||| |||||||||||||||||||| ||  ||||||||||||    
T  27779439 cagggccgttcttcggcatgcgcaaagagctctacggagtcgaacctccaatttat 27779384  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 556850 - 556804
Alignment:
Q  115 aaagggtgagtaagataggattaaaaataggtttaatttatcatttt 161  Q
    ||||||||| || |||| ||||| |||||||||||||||||||||||    
T  556850 aaagggtgaataggatatgattagaaataggtttaatttatcatttt 556804  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 18312559 - 18312486
Alignment:
Q  260 accagggccgttctctggcaagcgcaaagagctctacggagccgggcctccaatttattgggatctcaattattt 334  Q
    |||||| |||||||  |||||| |||||| ||||||||||| ||||||| ||||||| ||||  |||||||||||    
T  18312559 accaggcccgttcttgggcaagtgcaaagtgctctacggagtcgggccttcaattta-tggggcctcaattattt 18312486  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 31734363 - 31734325
Alignment:
Q  139 aaataggtttaatttatcattttttactggtgcaccaaa 177  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  31734363 aaataggtttaatttatcatttcttattggtgcaccaaa 31734325  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 9028691 - 9028740
Alignment:
Q  128 gataggattaaaaataggtttaatttatcattttttactggtgcaccaaa 177  Q
    ||||||||||||||||||||||| ||||| |||| |  ||||||||||||    
T  9028691 gataggattaaaaataggtttaaattatccttttatgttggtgcaccaaa 9028740  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 39283821 - 39283732
Alignment:
Q  72 ctatcaggttgctgacctaccaaaatctaactgtaaaattaataaagggtgagtaagataggattaaaaataggtttaatttatcatttt 161  Q
    ||||||||||||| ||| |||||||  |||   |||||  |||||||||||| || ||||||||| ||||  ||||||||||||| ||||    
T  39283821 ctatcaggttgctaacccaccaaaaattaaagataaaaaaaataaagggtgaatatgataggattgaaaaatggtttaatttatcctttt 39283732  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 18596636 - 18596723
Alignment:
Q  79 gttgctgacctaccaaaatctaactgtaaaattaataaagggtgagtaagataggattaaaaataggtttaatttatcattttttact 166  Q
    |||||| ||| ||||||| ||||   ||||| |||||||||||  ||| || |||||||||||||||||||| ||||||||| |||||    
T  18596636 gttgctaacccaccaaaaactaaggataaaagtaataaagggttggtatgaaaggattaaaaataggtttaaattatcatttcttact 18596723  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 8547435 - 8547520
Alignment:
Q  71 actatcaggttgctgacctaccaaaatctaactgtaaaattaataaagggtgagtaagataggattaaaaataggtttaatttatc 156  Q
    ||||||| |||||| ||| ||||||| |||| | ||||| ||| ||||||||| || |||| ||||| |||||||||||| |||||    
T  8547435 actatcatgttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatc 8547520  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 8573796 - 8573877
Alignment:
Q  79 gttgctgacctaccaaaatctaactgtaaaattaataaagggtgagtaagataggattaaaaataggtttaatttatcattt 160  Q
    |||||| ||| ||||||| |||| | ||||| ||| ||||||||| || |||| ||||| |||||||||||| |||||||||    
T  8573796 gttgctaacccaccaaaaactaagtataaaaataacaaagggtgaatatgataagattagaaataggtttaagttatcattt 8573877  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 262 - 335
Target Start/End: Complemental strand, 35162046 - 35161973
Alignment:
Q  262 cagggccgttctctggcaagcgcaaagagctctacggagccgggcctccaatttattgggatctcaattatttg 335  Q
    |||| |||||||  ||||||||||||||||||||||||| |||  |||||||||||  ||  ||||||||||||    
T  35162046 caggaccgttcttgggcaagcgcaaagagctctacggagtcggatctccaatttatgaggtcctcaattatttg 35161973  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 53220741 - 53220688
Alignment:
Q  281 gcgcaaagagctctacggagccgggcctccaatttattgggatctcaattattt 334  Q
    |||||| |||||||||||||||| ||||||||||||| |||  |||||||||||    
T  53220741 gcgcaaggagctctacggagccgagcctccaatttatgggggcctcaattattt 53220688  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 161
Target Start/End: Complemental strand, 40417023 - 40416973
Alignment:
Q  111 taataaagggtgagtaagataggattaaaaataggtttaatttatcatttt 161  Q
    |||||||||||  ||| ||||||||||||||||  ||||||||||||||||    
T  40417023 taataaagggttggtaggataggattaaaaatatatttaatttatcatttt 40416973  T

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